PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019198027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | bHLH | ||||||||
Protein Properties | Length: 471aa MW: 49338.7 Da PI: 6.5988 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.1 | 5.6e-12 | 275 | 320 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_019198027.1 275 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYLKFLQ 320 99***********************8.....6******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence |
MKQSTNSLIY QQQYQHTSEQ SQMNSVQDFQ VVAGAGGGAT QHHISSSLFD STAASSTDFL 60 EHFLSSVPSS SPWPDLTKSH SPWDSHHLTS PPLLPNPNSA VDDHAYHFDD QSTALLASKL 120 RQHQINGDDG GGCSSSAAKA LLLQQHLLLS RGFSGTGLRS PTGRVGDNGL LGMPLSLRNG 180 DQNEAIENPV SDCSVQPVYN GFTGSLGQTS SHPHHFNHPQ GGSMQAHNFG APAPSPMNQP 240 PAATASGSTG GAGTAPVQPK QQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA 300 NKTDKASMLD EIIDYLKFLQ LQVKVLSMSR LGGAATVSPL VTDMSSEGGG DCLQGNGASS 360 SSNNEGMAMT MTEQQVAKLM EEDMGSAMQY LQGKGLCLMP ISLATAISTA TCHSRNTLFG 420 GGSTTNAAEA AGVPSSPSFS ALTVQSATTM GNGAIDLSVK DAASVSKPSS S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 280 | 285 | RLRRER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 4e-72 | bHLH family protein |