PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198026.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 484aa MW: 50623.1 Da PI: 6.7951

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198026.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.8e-12	275	320	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_019198026.1 275 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYLKFLQ 320 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MKQSTNSLIY QQQYQHTSEQ SQMNSVQDFQ VVAGAGGGAT QHHISSSLFD STAASSTDFL 60 EHFLSSVPSS SPWPDLTKSH SPWDSHHLTS PPLLPNPNSA VDDHAYHFDD QSTALLASKL 120 RQHQINGDDG GGCSSSAAKA LLLQQHLLLS RGFSGTGLRS PTGRVGDNGL LGMPLSLRNG 180 DQNEAIENPV SDCSVQPVYN GFTGSLGQTS SHPHHFNHPQ GGSMQAHNFG APAPSPMNQP 240 PAATASGSTG GAGTAPVQPK QQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA 300 NKTDKASMLD EIIDYLKFLQ LQVKVLSMSR LGGAATVSPL VTDMSSEGGG DCLQGNGGGR 360 SSKLNRGAEA ASSSSNNEGM AMTMTEQQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI 420 STATCHSRNT LFGGGSTTNA AEAAGVPSSP SFSALTVQSA TTMGNGAIDL SVKDAASVSK 480 PSSS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MKQSTNSLIY QQQYQHTSEQ SQMNSVQDFQ VVAGAGGGAT QHHISSSLFD STAASSTDFL  60
EHFLSSVPSS SPWPDLTKSH SPWDSHHLTS PPLLPNPNSA VDDHAYHFDD QSTALLASKL  120
RQHQINGDDG GGCSSSAAKA LLLQQHLLLS RGFSGTGLRS PTGRVGDNGL LGMPLSLRNG  180
DQNEAIENPV SDCSVQPVYN GFTGSLGQTS SHPHHFNHPQ GGSMQAHNFG APAPSPMNQP  240
PAATASGSTG GAGTAPVQPK QQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA  300
NKTDKASMLD EIIDYLKFLQ LQVKVLSMSR LGGAATVSPL VTDMSSEGGG DCLQGNGGGR  360
SSKLNRGAEA ASSSSNNEGM AMTMTEQQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI  420
STATCHSRNT LFGGGSTTNA AEAAGVPSSP SFSALTVQSA TTMGNGAIDL SVKDAASVSK  480
PSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	280	285	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	8e-69	bHLH family protein