PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197845.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 495aa MW: 54423.2 Da PI: 4.8251

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197845.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.8e-16	38	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l ++v+++G g+W+++ ++ g+ R++k+c++rw ++l XP_019197845.1 38 KGPWTSAEDAILMEYVTRHGEGNWNAVQKHTGLARCGKSCRLRWANHL 85 79******************************************9986 PP
2	Myb_DNA-binding	52.7	9.8e-17	91	134	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ XP_019197845.1 91 KGAFTPEEEHRIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 134 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MSITSESEDS MTLKGNVNSP SVEEATGGAN AGGVPLKKGP WTSAEDAILM EYVTRHGEGN 60 WNAVQKHTGL ARCGKSCRLR WANHLKPDLK KGAFTPEEEH RIIELHAKMG NKWARMAAEL 120 PGRTDNEIKN YWNTRIKRRQ RAGLPIYPPD VHLQAIHESN QNEDMSTFST GDTQHSNLLQ 180 VNYFEIPAVE FKNLELNQQL HPQSPLDIPA SSLLAQGLNS SYGPRPFFST MNPSKRLRGP 240 DSLFTGLSSN DSDIFTAFGP YQNDTCMQVS QSSGFSSGYY QNLDPDHPSL SCVIPGSHAS 300 LNSNSSSLEP AWAKKPELPS LQSQIVSWDS PSSPLPSLES VETLIQSPPT ERSESGNVSP 360 RNSGLLEAVL YESQTLKHSK NTLPQQNSGA SIIPSDIVDN TFPDFHETEW EGYSDPISPL 420 GHSAASVFNE YTPISASSLE EHQSVEMLAG CKFTQEDAPL APMQCDDKDD ALNQIFSRPD 480 FLLDSNCFGL KTDLN

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MSITSESEDS MTLKGNVNSP SVEEATGGAN AGGVPLKKGP WTSAEDAILM EYVTRHGEGN  60
WNAVQKHTGL ARCGKSCRLR WANHLKPDLK KGAFTPEEEH RIIELHAKMG NKWARMAAEL  120
PGRTDNEIKN YWNTRIKRRQ RAGLPIYPPD VHLQAIHESN QNEDMSTFST GDTQHSNLLQ  180
VNYFEIPAVE FKNLELNQQL HPQSPLDIPA SSLLAQGLNS SYGPRPFFST MNPSKRLRGP  240
DSLFTGLSSN DSDIFTAFGP YQNDTCMQVS QSSGFSSGYY QNLDPDHPSL SCVIPGSHAS  300
LNSNSSSLEP AWAKKPELPS LQSQIVSWDS PSSPLPSLES VETLIQSPPT ERSESGNVSP  360
RNSGLLEAVL YESQTLKHSK NTLPQQNSGA SIIPSDIVDN TFPDFHETEW EGYSDPISPL  420
GHSAASVFNE YTPISASSLE EHQSVEMLAG CKFTQEDAPL APMQCDDKDD ALNQIFSRPD  480
FLLDSNCFGL KTDLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	5e-82	MYB family protein