PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197789.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 870aa MW: 98652.9 Da PI: 6.9756

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197789.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.6	9.8e-14	56	129	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY+eY+k++GF++r+s+ + k + + t r+f C + g ++++ ++ C a+l+++++ ++kw+vtk+ +H+H++ XP_019197789.1 56 FYDEYGKRMGFRTRVSHFGRLKADVSSTFRDFLCARDGLKKRTGET--------------CGAMLRIELKGKNKWVVTKFLRDHSHSI 129 9************************************9998777..............************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence
MDVEVIDVEE GNMGQHGGVT DDGDDELSES STQDVNRAVE PHLGMEFHSE DAAKTFYDEY 60 GKRMGFRTRV SHFGRLKADV SSTFRDFLCA RDGLKKRTGE TCGAMLRIEL KGKNKWVVTK 120 FLRDHSHSIE SPNNVHYLRA HRHTAMTTKV ATENSLAAGL VPSGVMYVSV DGSHAPIEMN 180 HGVKNCRTAD SDRLTKNSTT LMYAPKQYNQ RRTLGRDAHG LLDYFKKMQA ENPGFYYAIQ 240 LDEDNRMANV FWADSRSRNA YSHFGDAVTL DTTYRVKHCK VPFAPFTGVN HHGQLILFGC 300 ALLLDESEAT FVWLFKTFLA AMNNHAPISL TTDQDRAIQS AVAQVFPETC HCINKWDVLR 360 QGQERMAPVC IMHPNFQVEL YNCINMTETV EEFELCWDSI LRKYDLQKND WLHSIYNVRQ 420 RWAPVYFRAS FFAAIASNQG SESSFFDGYV NQQTTLPIFI RQYEAALENS FEKEIESDFE 480 TICTTPVLRT PSPMEKQAAN LYTRWIFSKF QVELVETFVY TANMIDGDGT VSMYRVAKFE 540 DDSKAYIVSL NCSEMKAKCS CQMFEYSGIL CRHILTVFTV TNVLTLPSHY ILKRWTRNAK 600 SVVGSDECGE RHSNESMLAR YNSLCREAIR YAEEGALAPE TYNVALSALK EAKKKVSAAK 660 KNVARVIPPN SQVSGVYDDR RSSGSAPDMN PILWPCQDEM MKHFNLNVCV PTKPVTDLNI 720 PRMAPVSVHR DDGHTDNMVS LPCLKSMTWV MENKSSTPAN RVAVINLKLQ DYSRSTPQES 780 EVKFQLSKIT LEPMLKSMAY ISEQLSTANR VAVINLKLQD TETTSGESEV KFQVSRDTLG 840 AMLRSMAYIR EQLSNTVEPQ VETPSKKQRK

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence

MDVEVIDVEE GNMGQHGGVT DDGDDELSES STQDVNRAVE PHLGMEFHSE DAAKTFYDEY  60
GKRMGFRTRV SHFGRLKADV SSTFRDFLCA RDGLKKRTGE TCGAMLRIEL KGKNKWVVTK  120
FLRDHSHSIE SPNNVHYLRA HRHTAMTTKV ATENSLAAGL VPSGVMYVSV DGSHAPIEMN  180
HGVKNCRTAD SDRLTKNSTT LMYAPKQYNQ RRTLGRDAHG LLDYFKKMQA ENPGFYYAIQ  240
LDEDNRMANV FWADSRSRNA YSHFGDAVTL DTTYRVKHCK VPFAPFTGVN HHGQLILFGC  300
ALLLDESEAT FVWLFKTFLA AMNNHAPISL TTDQDRAIQS AVAQVFPETC HCINKWDVLR  360
QGQERMAPVC IMHPNFQVEL YNCINMTETV EEFELCWDSI LRKYDLQKND WLHSIYNVRQ  420
RWAPVYFRAS FFAAIASNQG SESSFFDGYV NQQTTLPIFI RQYEAALENS FEKEIESDFE  480
TICTTPVLRT PSPMEKQAAN LYTRWIFSKF QVELVETFVY TANMIDGDGT VSMYRVAKFE  540
DDSKAYIVSL NCSEMKAKCS CQMFEYSGIL CRHILTVFTV TNVLTLPSHY ILKRWTRNAK  600
SVVGSDECGE RHSNESMLAR YNSLCREAIR YAEEGALAPE TYNVALSALK EAKKKVSAAK  660
KNVARVIPPN SQVSGVYDDR RSSGSAPDMN PILWPCQDEM MKHFNLNVCV PTKPVTDLNI  720
PRMAPVSVHR DDGHTDNMVS LPCLKSMTWV MENKSSTPAN RVAVINLKLQ DYSRSTPQES  780
EVKFQLSKIT LEPMLKSMAY ISEQLSTANR VAVINLKLQD TETTSGESEV KFQVSRDTLG  840
AMLRSMAYIR EQLSNTVEPQ VETPSKKQRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1 family protein