PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197710.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 804aa MW: 89171.1 Da PI: 6.8245

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.4	4.7e-18	150	239	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA +GF+ rk +++++ r+g +++++ Cs eg+++ + + t+k r+r+++r+gCkak++ k++++g + v+ le+ H+H ++ XP_019197710.1 150 FYKQYAGAAGFDCRKGSTRRR-RDGVVVEKHVLCSPEGFKHIISVDakTNKVTRRRVTNRVGCKAKVVYKLKSNGLYSVHYLEERHTHLMC 239 9*************98886.9999**********976655447888899*******************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence
MEPGMLSCEA VNSDSVGGVC DKVNSTDIGG CDELNLDSVG VEGNGGCDEV KSSDVCVEGS 60 DVGCDEVKSS DACVEGSDGG CNEGNSTEVG VEGNGGCCNE DCPTDVGVGD SVCDLEISPG 120 LTKYWRPVCA DSLKPHVGQK FDSLDGAIAF YKQYAGAAGF DCRKGSTRRR RDGVVVEKHV 180 LCSPEGFKHI ISVDAKTNKV TRRRVTNRVG CKAKVVYKLK SNGLYSVHYL EERHTHLMCS 240 IIVKQFLKVN RSLDAGHQMF IASCFWANIG SVRSYRLFKA IVGDYSSVGA TGVDFKNFKR 300 DLMAYILNGD AQLFIDTLFK RREVCEAFDF EYDVDDGDQL SRVFWADAVS RKNFALFGDV 360 VSFDATYRTN RYNLVFVPFT GIDNHKRSIT FGAGLLTRED VDSYVWLLEK FKKTMRHDPI 420 CVVTDQDPAV KLAVARVFGT SKHRFCMWHI MCKVGEKVGP VLSKDEVFRR KLNCIVWNKS 480 LDAKAFEDAW SHIMEEYGLG DNGWFRYLFE SRTFWASPYF HDEFMSGLVR TTSRSESQNS 540 FFGSFSNGHS SLVEFLVHFG SAIGAQRHTQ AKMNADCESC FPVLKTPLAL EKHAMDVYTI 600 SVFYDVQVEI CAACFSCRVA SLCNCDGHVS YVINDGDQRP WCVELVLSDY TATCSCKMFE 660 RMGLLCRHIF LVFKDCGLES IPSRYLVDRW TKGACLKPIF DIDDTVVDQS SKVENVRVLT 720 NILCENGSGV AGGSKQSVIN SVCGVVSQQS TVEVYDPIQA KNKGSGKRLK SAREKAARKC 780 VKQSRKCHTC DEYGHNSRTC PLNG

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence

MEPGMLSCEA VNSDSVGGVC DKVNSTDIGG CDELNLDSVG VEGNGGCDEV KSSDVCVEGS  60
DVGCDEVKSS DACVEGSDGG CNEGNSTEVG VEGNGGCCNE DCPTDVGVGD SVCDLEISPG  120
LTKYWRPVCA DSLKPHVGQK FDSLDGAIAF YKQYAGAAGF DCRKGSTRRR RDGVVVEKHV  180
LCSPEGFKHI ISVDAKTNKV TRRRVTNRVG CKAKVVYKLK SNGLYSVHYL EERHTHLMCS  240
IIVKQFLKVN RSLDAGHQMF IASCFWANIG SVRSYRLFKA IVGDYSSVGA TGVDFKNFKR  300
DLMAYILNGD AQLFIDTLFK RREVCEAFDF EYDVDDGDQL SRVFWADAVS RKNFALFGDV  360
VSFDATYRTN RYNLVFVPFT GIDNHKRSIT FGAGLLTRED VDSYVWLLEK FKKTMRHDPI  420
CVVTDQDPAV KLAVARVFGT SKHRFCMWHI MCKVGEKVGP VLSKDEVFRR KLNCIVWNKS  480
LDAKAFEDAW SHIMEEYGLG DNGWFRYLFE SRTFWASPYF HDEFMSGLVR TTSRSESQNS  540
FFGSFSNGHS SLVEFLVHFG SAIGAQRHTQ AKMNADCESC FPVLKTPLAL EKHAMDVYTI  600
SVFYDVQVEI CAACFSCRVA SLCNCDGHVS YVINDGDQRP WCVELVLSDY TATCSCKMFE  660
RMGLLCRHIF LVFKDCGLES IPSRYLVDRW TKGACLKPIF DIDDTVVDQS SKVENVRVLT  720
NILCENGSGV AGGSKQSVIN SVCGVVSQQS TVEVYDPIQA KNKGSGKRLK SAREKAARKC  780
VKQSRKCHTC DEYGHNSRTC PLNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-85	FAR1 family protein