PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197192.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 436aa MW: 49902.6 Da PI: 7.9104

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197192.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52	2.4e-16	64	162	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +Y +YA+ F+vr+s+ k+ r+gei++ +vCs++g + +k +++err r ++r++C a++ +k+++g++ev+ l++eH+ XP_019197192.1 64 CYINYARIYEFDVRQSSVKRD-RDGEIYSGYLVCSRQGVKGGGNKPhgyervlggrEKRERRCRLSNRVNCGARIGFTKKSSGEFEVSVLVEEHT 157 799***********98887.9999*********9998888999**99999******************************* PP FAR1 87 Helap 91 H+l++ XP_019197192.1 158 HKLCS 162 *85 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MTTSNPDAGG VKEGVAMIPE TASEPGFAMG STTTDQQQWT PTVSASIRPT PGRVFKTLNE 60 GINCYINYAR IYEFDVRQSS VKRDRDGEIY SGYLVCSRQG VKGGGNKPHG YERVLGGREK 120 RERRCRLSNR VNCGARIGFT KKSSGEFEVS VLVEEHTHKL CSEPSKVFMR INRRLGVVQQ 180 AFLSNCVKAN IGASTGLRFC KEKTGSYANI GATDVEFHNF KRDVQTYINV ADGEMIIATF 240 KAKHEACSDF FFEYDLDEEH RVSRLFWTDP LSRRKFSCYG DNISFDATYG TNRYSMVFVP 300 FTGVDNHKRC ITFGAGLLIK EDADSYSWLL EQFICAMGKR PVCVVTDQDP AMRIAIERVL 360 PECHHRYCMW HIMTNVNEKL VSELAKDNEF RKKLNAIIWN DTIDRVEFEA QWQLLMDEYN 420 LSTYRWFCKM YAERES

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MTTSNPDAGG VKEGVAMIPE TASEPGFAMG STTTDQQQWT PTVSASIRPT PGRVFKTLNE  60
GINCYINYAR IYEFDVRQSS VKRDRDGEIY SGYLVCSRQG VKGGGNKPHG YERVLGGREK  120
RERRCRLSNR VNCGARIGFT KKSSGEFEVS VLVEEHTHKL CSEPSKVFMR INRRLGVVQQ  180
AFLSNCVKAN IGASTGLRFC KEKTGSYANI GATDVEFHNF KRDVQTYINV ADGEMIIATF  240
KAKHEACSDF FFEYDLDEEH RVSRLFWTDP LSRRKFSCYG DNISFDATYG TNRYSMVFVP  300
FTGVDNHKRC ITFGAGLLIK EDADSYSWLL EQFICAMGKR PVCVVTDQDP AMRIAIERVL  360
PECHHRYCMW HIMTNVNEKL VSELAKDNEF RKKLNAIIWN DTIDRVEFEA QWQLLMDEYN  420
LSTYRWFCKM YAERES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-51	FAR1 family protein