PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197151.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 617aa MW: 69766.5 Da PI: 8.9617

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197151.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.7e-21	29	116	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn YA++vGFsvrk +++++ +++i +++f C k g++++ ++ + ++ rtgC a ++ dg w vtk +eHnHel++ XP_019197151.1 29 LYNGYAYRVGFSVRKGQQRYKASTKSIQMKRFFCAKAGYKQKPNSG--VKLYSKIDMRTGCGAFVQFDVGGDGMWTVTKHLKEHNHELCS 116 7**************************************99887..888999********************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MCGYIFVAIA VDEDLVGVVV RNVDEAFELY NGYAYRVGFS VRKGQQRYKA STKSIQMKRF 60 FCAKAGYKQK PNSGVKLYSK IDMRTGCGAF VQFDVGGDGM WTVTKHLKEH NHELCSFGKS 120 HLLRSHRRVG NNQLEYLKDM KSSGVALADG MRFLKHQSGG SPLVGFTNRD AYNSMASVSL 180 KCLDGSDSNS LVEIFRRRQS NEADFFFDFE TIMTDQCSAM AAGISMVFPT SRHRLCIWHI 240 GENSKKHIKA LRNHKDFLDM FNCVLKYTET EAEFEVYWTR MVTKYNCHKN TWLEKLYDCR 300 EKWCPAFNKD YFSGGILSSQ RSESTNHAIS RRLSKTAGLC DFYSSFVSVI SEWRSKENGE 360 DFRCSQGVPA MMLDHVKLLS HARECKYHVW RPDIDIIRHE VTFKAINLDI CCSCKLFSEL 420 GILCCHCLRI LHVHCVSSIP DKYILKRWTK KAVERTNVDI ASVFYNGGVP SSIWAVEISR 480 KFQRLIVSSQ DNSVARQLCD EAVENARKNI EAEIGDVNTE EGAVSSSSGI VQDPSSRRGK 540 GVRNKRSSSV IEKKYNAARG RKSAANKLAS ITKGSVQSLV LENISEIARD GYLVHPSTGG 600 SQFVHFNKNV DHDVAID

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MCGYIFVAIA VDEDLVGVVV RNVDEAFELY NGYAYRVGFS VRKGQQRYKA STKSIQMKRF  60
FCAKAGYKQK PNSGVKLYSK IDMRTGCGAF VQFDVGGDGM WTVTKHLKEH NHELCSFGKS  120
HLLRSHRRVG NNQLEYLKDM KSSGVALADG MRFLKHQSGG SPLVGFTNRD AYNSMASVSL  180
KCLDGSDSNS LVEIFRRRQS NEADFFFDFE TIMTDQCSAM AAGISMVFPT SRHRLCIWHI  240
GENSKKHIKA LRNHKDFLDM FNCVLKYTET EAEFEVYWTR MVTKYNCHKN TWLEKLYDCR  300
EKWCPAFNKD YFSGGILSSQ RSESTNHAIS RRLSKTAGLC DFYSSFVSVI SEWRSKENGE  360
DFRCSQGVPA MMLDHVKLLS HARECKYHVW RPDIDIIRHE VTFKAINLDI CCSCKLFSEL  420
GILCCHCLRI LHVHCVSSIP DKYILKRWTK KAVERTNVDI ASVFYNGGVP SSIWAVEISR  480
KFQRLIVSSQ DNSVARQLCD EAVENARKNI EAEIGDVNTE EGAVSSSSGI VQDPSSRRGK  540
GVRNKRSSSV IEKKYNAARG RKSAANKLAS ITKGSVQSLV LENISEIARD GYLVHPSTGG  600
SQFVHFNKNV DHDVAID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	5e-34	FAR1 family protein