PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019196959.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 375aa    MW: 40460.5 Da    PI: 7.696
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019196959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-13120164347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_019196959.1 120 PWSEEEHRLFLLGLQKLGKGDWRGISRNFVTTRTPTQVASHAQKY 164
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    
MTRRCSHCSN DGHNSRTCPS RGGPAAAAAG GSVRLFGVRL TDGSIMKKSA SMGNLGSFMK  60
KSASMGNLSS SAAASPNPGG SPSWDVLREP AHSTDGYLSD DPAHASSSTN RRAERKKGVP  120
WSEEEHRLFL LGLQKLGKGD WRGISRNFVT TRTPTQVASH AQKYFIRHSN ATRRKRRSSL  180
FDMVPDAAID PQPMPEEQFM LPPQALETET AELVPPASKA VETDSADSLP SLDLSLKPDV  240
DSMDATPTEL VQENFTVTTE IPLVYPQFIP AYIPIPFPIW PSNAVALDED RGGAETSRHQ  300
ILKPIPVVPK EPVNVDELVG MSRLSLGETR SGQKDPLPLS LKLTGESSRQ SAFHARTPDN  360
SSGISKGETT PIQAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.12e-70MYB_related family protein