PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196738.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 408aa MW: 46047.3 Da PI: 4.8404

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196738.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	180	198	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 +C++ F++ ++L++Hi ++ XP_019196738.1 180 HCNMKFKTEDELEQHIASC 198 7***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MQESSNMKPF SIDGEVKPAT LEKVKEEGLL LHCNLFDVEM VYKIAEEFLT GFASACVDNT 60 AGGLWSSPAA VAVDIRREMV EYLIRRSETF VAESIVLECT PDIGVSANPF DIISDLIDDF 120 AHSKRNFFSH VSVWLSSDRR EDRIEDFVEE LELNGFWLIS RREEVAKTLL RNVDFKTSYH 180 CNMKFKTEDE LEQHIASCNF RTVNCVNEGC DAVYSAGNLE EHDSTCPFKT LPCEQKCADI 240 IMRRDMDRHC ITVCPMKLVN CPFYPVGCLC TIPQCTVGQH RSENLQSHLI SVLKLIHKEA 300 SLEALKERAE LLEKALSPQR LSAAKDARSL TFTIKDHNTK LGPLVGVKKN AESDAEDEKL 360 TNGEDNSMAL SSMGKQLYKN EVPTILQTEN KKISESPFEE DNSKESPR

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MQESSNMKPF SIDGEVKPAT LEKVKEEGLL LHCNLFDVEM VYKIAEEFLT GFASACVDNT  60
AGGLWSSPAA VAVDIRREMV EYLIRRSETF VAESIVLECT PDIGVSANPF DIISDLIDDF  120
AHSKRNFFSH VSVWLSSDRR EDRIEDFVEE LELNGFWLIS RREEVAKTLL RNVDFKTSYH  180
CNMKFKTEDE LEQHIASCNF RTVNCVNEGC DAVYSAGNLE EHDSTCPFKT LPCEQKCADI  240
IMRRDMDRHC ITVCPMKLVN CPFYPVGCLC TIPQCTVGQH RSENLQSHLI SVLKLIHKEA  300
SLEALKERAE LLEKALSPQR LSAAKDARSL TFTIKDHNTK LGPLVGVKKN AESDAEDEKL  360
TNGEDNSMAL SSMGKQLYKN EVPTILQTEN KKISESPFEE DNSKESPR