PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196498.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 482aa MW: 53200.3 Da PI: 7.8174

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.2	3.2e-16	210	259	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a++k++g XP_019196498.1 210 SQYRGVTFYRRTGRWESHIWD------CgKQIYLGGFDTAHFAARAYDRAALKFRG 259 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MHIFSDHFFS LFIRRRAVKE KISATTVRLQ RNLQKRSNNH YLLAHATIYI ERERRESERE 60 RKEMLDLNLE AVPGSDSACD DAETTAASAI VGGDSGASVT ASSSDESNSS SHTLADGGCN 120 SLCTLNFSIL KSDADQAIED EEDCNGDHSA VTDQLVPVAG LSFPSTVEPP PPPLAQSWLN 180 LSVLESGCNS PRMPQPAVRK PRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQIYLGGF 240 DTAHFAARAY DRAALKFRGV DADINFQIGD YEEDMKQTKN LTKEEFVQTL RRQSTGFYKR 300 TSRYRGVTLH KCGRWDAQIG QFLGDRDAGG GDGLDPNHWI SAPLGGLKGP DDNTRKLEFN 360 FGVCQTPVLK QVNLLFTNAY PSRFSHESSY IAVGSSPATP RAPAMGSKYS IWTIPSMHPG 420 IISNTHQERP MGMRVEKPPA PAFSSDWQWK MQSQGEGVVT SSVPLYSSAA SSGFSSTTTP 480 PT

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MHIFSDHFFS LFIRRRAVKE KISATTVRLQ RNLQKRSNNH YLLAHATIYI ERERRESERE  60
RKEMLDLNLE AVPGSDSACD DAETTAASAI VGGDSGASVT ASSSDESNSS SHTLADGGCN  120
SLCTLNFSIL KSDADQAIED EEDCNGDHSA VTDQLVPVAG LSFPSTVEPP PPPLAQSWLN  180
LSVLESGCNS PRMPQPAVRK PRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQIYLGGF  240
DTAHFAARAY DRAALKFRGV DADINFQIGD YEEDMKQTKN LTKEEFVQTL RRQSTGFYKR  300
TSRYRGVTLH KCGRWDAQIG QFLGDRDAGG GDGLDPNHWI SAPLGGLKGP DDNTRKLEFN  360
FGVCQTPVLK QVNLLFTNAY PSRFSHESSY IAVGSSPATP RAPAMGSKYS IWTIPSMHPG  420
IISNTHQERP MGMRVEKPPA PAFSSDWQWK MQSQGEGVVT SSVPLYSSAA SSGFSSTTTP  480
PT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	206	PRRGPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.2	8e-54	AP2 family protein