PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196451.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 1694aa MW: 184447 Da PI: 5.7509

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29	2.5e-09	809	850	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e+++d + +G++ +++Ia+ + ++t +c+++++k XP_019196451.1 809 PWTSEEREIFIDKLATFGKD-FSKIASFLD-HKTTADCIEFYYK 850 8***************99.*****.*********98 PP
2	Myb_DNA-binding	29.6	1.6e-09	1022	1062	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE + +++av +G++ ++ I+r + +R++ qck ++ XP_019196451.1 1022 DWTDEEKLMFIQAVSSYGKD-FTMISRFVK-TRSRDQCKIFFS 1062 5***************99.****9.******8775 PP

Sequence ? help Back to Top
Protein Sequence Length: 1694 aa Download sequence
MPPEPSPWDR KDFFRERKHE RSELLGGGGG GGASGFGGGA RWREHPLNHH HYSSSRWVPD 60 FRSRYPPGHG KQGGWHLYQE ESAHGFMVSR SSEKIIEDDS GRPSGSRGEG KYSRNGRENR 120 GSFGQRDWRC HSWETTSPNG PGRLNETNDQ RLVDGVMNCQ SSQPHSEYVN SRDQSHSRDQ 180 HNKSGTNGLG STGQRVEREN SLGSIEWKPL KWTRSGSLSS RGSFSHSNSS KSTGLESNET 240 KAEMHPKNLT PIQSPSGDAT ACVTSSAPLE ETNSRKKPRL GWGEGLAKYE KKKVEGPDDS 300 AIKNCTVNSG NNLEANHSNP VILADKSPQV AGSSDCASPA TPSSVACSSS PGLEEKQFVK 360 ATHADQDSGD IIGSPCAVSL RHPEDIVFNL EDLDLTKISK LNTKINELLQ SDASSFNDNG 420 FIRSTALNKL LVLKSDVSKI VEKTELEIDM LENELKSLNS GTENRCPAPS ASSSLPKECE 480 SKPFEDQGAT PNVSNRLISL GEISSFVDTN MDTIHDAHGA EDVKVKILDI DSPGSATSKL 540 VEVPSTDKNV SASEEKNVEA LVMTDVTDCR YLEVENALPS SEEENANEIS TCEKTSQIIA 600 GDHKSLSDGN LNCSGDDLYN LIFAANKESA NRAAEVLNSL LPANGCSFDI SRASSSLLVV 660 DPAIKEKVIK RKKHQQSKEK ILALKFKVFH HLWKEDTNML SLRKFRAKSQ RKFDLSLRPV 720 HIGHQKHRLS SRSRPSSAVG NLNLVPSSEL LNFTSRLLSD SKVKVYRSTE RMPALILDKK 780 EKMISRFISN NGLVEDPCSS EKERLTINPW TSEEREIFID KLATFGKDFS KIASFLDHKT 840 TADCIEFYYK NHKSDCFAKT KRKPGYTKQG KSTYLVASGG KRWNREVNAV SLDILGAASA 900 IAANVDDEIV FQKCTSKYLL GVTSETKMPR HDELDVSNSL DVCNSDRETV AADVLAGICG 960 SLSSEAMSSC ITSSIDPSDG YHEWKYQKVS SSTRRPLTPE VTQSVDDETC SDESCGEMDP 1020 TDWTDEEKLM FIQAVSSYGK DFTMISRFVK TRSRDQCKIF FSKARKCLGL DTISPQPGNV 1080 VREDANGGGS DAEDACLLET DSSICIKESG IKVESPNMKL NQELDLAEGM DVKPDLNSSE 1140 DNGDNGTGDL DSIDTELVSN HMSPNACDMD KQEIESDRDI KDEANVVVQG AGNVISSPFQ 1200 SELVVDKSGD ECLPDKNCSD ANAGEGDDVA KNLTEESRDH LAPLPECSLN VKSGLQLAGY 1260 DTSTIADTSS GMDDISGCHT KGDSESDSRL KSDVSSLQVS NNAPLMQSPS QDSAVIACEA 1320 SNGDKLTNLD LESVGDLKHL KSSGVSEQHI SEHIESLQVI GSIAKENGDF GCKISASVQG 1380 LPKADRNTQS ARLKTADCVV RKCSSSPHGS CSITEQPFPN QQQTQSSSCS EVGKPSRNGD 1440 VKLFGQILTK PSSQQNSNCN TQRREETSMQ HPKINNSKSF GVNDGIPGPG KFECNNFRGS 1500 ENHLPVRSYG YWDGNRIQTG FSSLPDSTIL LAKYPAAFGN YAMPSTTKME QPPFHAVVKS 1560 SERNLNGVPV VYPSSNGVAA AAADFQVYRS REVQQPFGLD MKQRPEVSFS EMQRRSGGFD 1620 VVSGMQQQAR GRLGINVVGR GGILVGGGQC TGGVSDPVAA IKMHYAKVEQ FGGQGGGSMM 1680 REEDTWRGKG EIGR

Sequence ? help Back to Top

Protein Sequence Length: 1694 aa Download sequence

MPPEPSPWDR KDFFRERKHE RSELLGGGGG GGASGFGGGA RWREHPLNHH HYSSSRWVPD  60
FRSRYPPGHG KQGGWHLYQE ESAHGFMVSR SSEKIIEDDS GRPSGSRGEG KYSRNGRENR  120
GSFGQRDWRC HSWETTSPNG PGRLNETNDQ RLVDGVMNCQ SSQPHSEYVN SRDQSHSRDQ  180
HNKSGTNGLG STGQRVEREN SLGSIEWKPL KWTRSGSLSS RGSFSHSNSS KSTGLESNET  240
KAEMHPKNLT PIQSPSGDAT ACVTSSAPLE ETNSRKKPRL GWGEGLAKYE KKKVEGPDDS  300
AIKNCTVNSG NNLEANHSNP VILADKSPQV AGSSDCASPA TPSSVACSSS PGLEEKQFVK  360
ATHADQDSGD IIGSPCAVSL RHPEDIVFNL EDLDLTKISK LNTKINELLQ SDASSFNDNG  420
FIRSTALNKL LVLKSDVSKI VEKTELEIDM LENELKSLNS GTENRCPAPS ASSSLPKECE  480
SKPFEDQGAT PNVSNRLISL GEISSFVDTN MDTIHDAHGA EDVKVKILDI DSPGSATSKL  540
VEVPSTDKNV SASEEKNVEA LVMTDVTDCR YLEVENALPS SEEENANEIS TCEKTSQIIA  600
GDHKSLSDGN LNCSGDDLYN LIFAANKESA NRAAEVLNSL LPANGCSFDI SRASSSLLVV  660
DPAIKEKVIK RKKHQQSKEK ILALKFKVFH HLWKEDTNML SLRKFRAKSQ RKFDLSLRPV  720
HIGHQKHRLS SRSRPSSAVG NLNLVPSSEL LNFTSRLLSD SKVKVYRSTE RMPALILDKK  780
EKMISRFISN NGLVEDPCSS EKERLTINPW TSEEREIFID KLATFGKDFS KIASFLDHKT  840
TADCIEFYYK NHKSDCFAKT KRKPGYTKQG KSTYLVASGG KRWNREVNAV SLDILGAASA  900
IAANVDDEIV FQKCTSKYLL GVTSETKMPR HDELDVSNSL DVCNSDRETV AADVLAGICG  960
SLSSEAMSSC ITSSIDPSDG YHEWKYQKVS SSTRRPLTPE VTQSVDDETC SDESCGEMDP  1020
TDWTDEEKLM FIQAVSSYGK DFTMISRFVK TRSRDQCKIF FSKARKCLGL DTISPQPGNV  1080
VREDANGGGS DAEDACLLET DSSICIKESG IKVESPNMKL NQELDLAEGM DVKPDLNSSE  1140
DNGDNGTGDL DSIDTELVSN HMSPNACDMD KQEIESDRDI KDEANVVVQG AGNVISSPFQ  1200
SELVVDKSGD ECLPDKNCSD ANAGEGDDVA KNLTEESRDH LAPLPECSLN VKSGLQLAGY  1260
DTSTIADTSS GMDDISGCHT KGDSESDSRL KSDVSSLQVS NNAPLMQSPS QDSAVIACEA  1320
SNGDKLTNLD LESVGDLKHL KSSGVSEQHI SEHIESLQVI GSIAKENGDF GCKISASVQG  1380
LPKADRNTQS ARLKTADCVV RKCSSSPHGS CSITEQPFPN QQQTQSSSCS EVGKPSRNGD  1440
VKLFGQILTK PSSQQNSNCN TQRREETSMQ HPKINNSKSF GVNDGIPGPG KFECNNFRGS  1500
ENHLPVRSYG YWDGNRIQTG FSSLPDSTIL LAKYPAAFGN YAMPSTTKME QPPFHAVVKS  1560
SERNLNGVPV VYPSSNGVAA AAADFQVYRS REVQQPFGLD MKQRPEVSFS EMQRRSGGFD  1620
VVSGMQQQAR GRLGINVVGR GGILVGGGQC TGGVSDPVAA IKMHYAKVEQ FGGQGGGSMM  1680
REEDTWRGKG EIGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-162	MYB family protein