PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019196414.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 330aa MW: 36942.2 Da PI: 7.8965 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++++ +G g+W++ ++ g+ R++k+c++rw +yl XP_019196414.1 14 RGLWSPEEDEKLINYISNYGHGCWSSLPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1.1e-15 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l++++++ lG++ W+ Ia++++ gRt++++k++w+ XP_019196414.1 67 RGSFSPQEAALIIELHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*******************.*********.***********8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence |
MGHHNCCNKQ KVKRGLWSPE EDEKLINYIS NYGHGCWSSL PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIIE LHRILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLISNG 120 RLSHLPSSPA PNPNFQTFYS LQLPSSSNIP NFIQNNNNNV ILNLPSPPMA QQLQADLDQM 180 NSLVFPVMPS VPLSSPQMMM METTSIDPTW FLGYPQPQNL MDHYPQTSLY NNNFDNELMV 240 PLLHHHHNDE PIIIPNLPGN LVLSSSSSSL SSGIAQQDEF IVPNPIIPSL PAYEIMLPPM 300 PSLSPSSSSS SSFSAVPCSQ LVMNPSTWVP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13890.2 | 5e-80 | MYB family protein |