PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019196363.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 596aa    MW: 67711.8 Da    PI: 6.6488
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019196363.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.11.1e-1652150190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                     +fY++YA+ vGF++r  ++k+  ++gei+ +   Cs++ ++++  +           ++ ++++++++r+ C a+++  + + g ++v +le++H
  XP_019196363.1  52 EFYSQYASVVGFDIRHGSEKRD-EQGEIVLKYVLCSRQDFKQSGGEGsgeggvpevtSTPSKKHKVSNRVACYARIEFMRVRGGGYKVFSLEKQH 145
                     6****************99988.78889999999********999889********9999999******************************** PP

            FAR1  86 nHela 90 
                     nH l+
  XP_019196363.1 146 NHCLC 150
                     **998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    
MTSGHDDSSC GSHGRCVMGI PMESAKYWAP ECDPSIEPIV GQRFATLNDG VEFYSQYASV  60
VGFDIRHGSE KRDEQGEIVL KYVLCSRQDF KQSGGEGSGE GGVPEVTSTP SKKHKVSNRV  120
ACYARIEFMR VRGGGYKVFS LEKQHNHCLC SEVARPFLKV NLKLDIGQKN FLACYGKENI  180
GPMKSFKIYK EGGSDAQLVL EKYLQKQEFC PGFFFDYDVD ENNQLCRVFW ADPVAQRNFS  240
CFGEAVSFDV MYCTTRYNMV FVSFTGVDHH KKCVTFAAGL IAKKDVESYV WLLENFKHAM  300
GHVPPYMVTN QDPAIKVAVS RVFSSTRHRF RMWHIMSKVG EKVGPVLAKD ESFRHDLDAV  360
VWNECLTVEE FESRWRVVME QYRLIEHRWF CHMFDLRAYW IPAFFRDTFM AGLFQMNSRY  420
EEENSVFGSC TNLHSTLVEF FIHFEGAIDN QRHTHATLNA NCDGNFPKLK TPLMIERHAA  480
AVYTTTLFYE VQSEIYDACF WPRILSNTHD GDLRQFVVED EDVGSFNVVL NVSDNSVECS  540
CRMFHRVGLK SGPGVDGSIG VEVANLSSSS NVVIQPPTIA KNKVSGKRLK SEEDSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-65FAR1 family protein