PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019196276.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 313aa    MW: 34965.2 Da    PI: 4.4993
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019196276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
   XP_019196276.1 16 KGPWSPAEDLRLISFIQKHGHPNWRALPKQAGLLRCGKSCRLRWINYL 63
                     79******************************99************97 PP
2Myb_DNA-binding56.94.8e-1869114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
   XP_019196276.1  69 RGNFTPEEEETIIKLHNSLGNK-WSKIAAHFP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MGKGRAPCCD KSKVKKGPWS PAEDLRLISF IQKHGHPNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTPEEEETI IKLHNSLGNK WSKIAAHFPG RTDNEIKNVW NTHLKKRLMN  120
KKGKGRSNNT TDDDDDEEDD EGPKNDTVSP DTPPQKDASL DASPTSSSSS SSSTKDDQAT  180
TEAPPEPPTP GGDNDSVIDM EIWRDMLDTL DDPSPQDPEI VVDLQPTGSS CGSGEIDKQV  240
EWLRYLENEL GLEDSPNNNN NNHAQPQKDD DDSNHNNLVF LDSFDGDDDD FNDMVASLYF  300
PTWPPCSPQH FGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.17e-74MYB family protein