PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019196274.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 364aa    MW: 39482.7 Da    PI: 6.6186
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019196274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.2e-17247281135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_019196274.1 247 CLHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 281
                     99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MAARGLFIDG GYLLPAGEAE FSSESRYVLE GKAAAMENNS NNFPVDDLLN FSVEDEVMAD  60
TFFDSVTGDS STVTGVDSCN SSISGGGGNF NGNLGCRSFT DAPFPPPSEI CVPYEDLAEL  120
EWLSNIVEDS FSSDELQNLH LISATKTAST AAAAAASNIT DTLSSVTNIA PKDEVSPPAF  180
RSDVSVPGKA RSKRSRTAPC DWSSRLLHLS SPATSSSDSN CSTAIPRATK TAACKRRENS  240
ETPGRKCLHC ASEKTPQWRT GPLGPKTLCN ACGVRYKSGR LVAEYRPAAS PTFESNRHSN  300
SHRKVLELRR QKDLRRQHHQ LQQQQHQSLI SQASIFGISN GAEDYLLHHH HHLESGCPDF  360
RHII
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303317RKVLELRRQKDLRRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-59GATA family protein