PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196248.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 390aa MW: 42171 Da PI: 5.0108

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.1e-08	293	333	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L XP_019196248.1 293 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 333 69****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MDIFDWDDEP FHVGGSSSTT TGMVGQAPPQ VEASAPFDPI NMVSNWNLPE RQEAAARLAA 60 DSMAARAGEV GGQGWSDAAL DDGSGMCGSG RDVLNRAGYV LNGGLMGDFC NFQAKAPAAG 120 SMASFDCLLS ATNSNTDASA EDDEISMIFS ADCKSLWNFN TGGNAVSSGE SACLEETVAK 180 TATISDTINC SNLLGKRRNP DPSNFNLIPE NIQPKSKKSR QENPRPSSSN INFQQPSSSA 240 SSVEEPDSEA IAQMKEMIYR AAAFRPVNFG AEAMEKPKRK NVRISTDPQT VAARQRRERI 300 SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRSQVKAL EAFGQKIDSS SSSLNFNHFI 360 PPSLPFNNYS IPMQPNLPLF NPNPIHRPRS

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MDIFDWDDEP FHVGGSSSTT TGMVGQAPPQ VEASAPFDPI NMVSNWNLPE RQEAAARLAA  60
DSMAARAGEV GGQGWSDAAL DDGSGMCGSG RDVLNRAGYV LNGGLMGDFC NFQAKAPAAG  120
SMASFDCLLS ATNSNTDASA EDDEISMIFS ADCKSLWNFN TGGNAVSSGE SACLEETVAK  180
TATISDTINC SNLLGKRRNP DPSNFNLIPE NIQPKSKKSR QENPRPSSSN INFQQPSSSA  240
SSVEEPDSEA IAQMKEMIYR AAAFRPVNFG AEAMEKPKRK NVRISTDPQT VAARQRRERI  300
SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRSQVKAL EAFGQKIDSS SSSLNFNHFI  360
PPSLPFNNYS IPMQPNLPLF NPNPIHRPRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	294	299	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-63	bHLH family protein