PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196105.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 701aa MW: 80385.6 Da PI: 8.3792

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196105.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.1	1.1e-21	44	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA vGF+vr+s k++ + g+i+k++ vCs+eg++e+++k+ t+k++r ++++r+gC a+l+++++k+gk++v++++ H+H l+ XP_019196105.1 44 FYMTYAGIVGFDVRRSFDKRN-KYGQIMKKKVVCSREGYKETKDKEtieegTTKQKRWKTTNRVGCPARLVLTLNKEGKYVVKTFVDRHTHVLC 136 9*************99998.6677**************999999999999*********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MDNGGACVMD VSPGGTHTWI PECDASLNPF EGQKFDTMED GITFYMTYAG IVGFDVRRSF 60 DKRNKYGQIM KKKVVCSREG YKETKDKETI EEGTTKQKRW KTTNRVGCPA RLVLTLNKEG 120 KYVVKTFVDR HTHVLCEEKY KRFMKVNRKI DIGHQEFITN CGKVNVGASK SFDIYAEMVG 180 GPENVGATQQ DFKNYKRELL AYMKEKDIQM VISQYLENKN DCVDMYFEYD VNEKDQLVFW 240 ADRRARMHYG AFGDVVSFDA TYKTNRYNLV FVPFTGIDNH KRCATFAAGL IDKEDVESYS 300 WILRNFKNAM GSTPPIVITD QDPAMKVAIE TEFPGTRHRY CMWHIMTKVG DKVGNTLAKN 360 EEFRRALNAV VWHEEATTIG FESAWHEVIQ KYGLLENRWL KRMYDERASW VPLFFEDVFM 420 GGLLRTTSRS EAENRIFQSN TNKHLCLVEF FKRFESAVRK QRDKHLELSA ACTGQTPPLK 480 TLLRIEREAA TVYTLTVFSD VQKEICEGWS TCRVRSYTEA EGVKTYVVED GTNKRYTVIV 540 EDGSNNTSCT CRLYTRIGLL CRHVFVVLKD EQIDHIPPQH ITPRWTKEAV KHIEKGTGVG 600 RQIGANNNAH NTTVEGKVIN TIYRCLGMAR GNGEKMQQIR NVIEELEATL CDKEVNRAEG 660 NAKRAVMEAY CGVPEPDTIK VHPHPPPPHP KSRRPKGLAS E

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MDNGGACVMD VSPGGTHTWI PECDASLNPF EGQKFDTMED GITFYMTYAG IVGFDVRRSF  60
DKRNKYGQIM KKKVVCSREG YKETKDKETI EEGTTKQKRW KTTNRVGCPA RLVLTLNKEG  120
KYVVKTFVDR HTHVLCEEKY KRFMKVNRKI DIGHQEFITN CGKVNVGASK SFDIYAEMVG  180
GPENVGATQQ DFKNYKRELL AYMKEKDIQM VISQYLENKN DCVDMYFEYD VNEKDQLVFW  240
ADRRARMHYG AFGDVVSFDA TYKTNRYNLV FVPFTGIDNH KRCATFAAGL IDKEDVESYS  300
WILRNFKNAM GSTPPIVITD QDPAMKVAIE TEFPGTRHRY CMWHIMTKVG DKVGNTLAKN  360
EEFRRALNAV VWHEEATTIG FESAWHEVIQ KYGLLENRWL KRMYDERASW VPLFFEDVFM  420
GGLLRTTSRS EAENRIFQSN TNKHLCLVEF FKRFESAVRK QRDKHLELSA ACTGQTPPLK  480
TLLRIEREAA TVYTLTVFSD VQKEICEGWS TCRVRSYTEA EGVKTYVVED GTNKRYTVIV  540
EDGSNNTSCT CRLYTRIGLL CRHVFVVLKD EQIDHIPPQH ITPRWTKEAV KHIEKGTGVG  600
RQIGANNNAH NTTVEGKVIN TIYRCLGMAR GNGEKMQQIR NVIEELEATL CDKEVNRAEG  660
NAKRAVMEAY CGVPEPDTIK VHPHPPPPHP KSRRPKGLAS E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-91	FAR1 family protein