PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196048.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 645aa MW: 73057.9 Da PI: 8.9679

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196048.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.3	3.9e-16	2	96	5	90
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YA+++GFsvr+ + k+ r+g++t+r + C++eg + +++ +++rr+r+++r++C+a++ ++k+k + + v+ ++ eH+H ++ XP_019196048.1 2 TYARTCGFSVRQGTLKRG-RDGKVTTRYLLCNREGVKGGGRSTpkpveggsggPSTQRRRRVSNRVNCNARICITKDKGAGFIVSIFVPEHTHRMC 96 7***********9998.8888*********9998888999**999999**********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence
MTYARTCGFS VRQGTLKRGR DGKVTTRYLL CNREGVKGGG RSTPKPVEGG SGGPSTQRRR 60 RVSNRVNCNA RICITKDKGA GFIVSIFVPE HTHRMCSEPS KLFMRINRKL DVAQQAFLTN 120 CIKVNVGGSK GFRLYKESVG SFANVGATET EFHNFKRDLQ SYVADKDGEM IIAMFNQKHD 180 VLHVGDMYSL VFIPFTGVDH HKRCITFAGG LVTREDTDSY VWVLERFKTA MGKSPLCVVT 240 DEDPAMKSAI ARVLPECRHR YCMWHIMTKV SEKSGAELSK DQNFRNQLNN IVWNETISID 300 DFETQWQSLM EKYNLTGHRW FTKLYTDRRF WIPSYFLDLP MSGVLRTTSR SEAENSAYGK 360 NTRPHCSLVE FYVQFESVLE TQRHRQSKLN AESEGSLPDF KTPLALERHM AQVFTLTVFY 420 ELQVEIEAAC FYCSVVGIHA YGECIRYDIR GEYNVVHTVE YTPSLTIATC SCKLFERLGF 480 VCRHMFLVFK DAEMVSLPSR YIAARWCKQE GLASWCARCS DCPPLETVPS QLWTEIHNCA 540 VIVGSNKVRQ TRMLQVIKEL RDEFLGDGMD VDPSKVNGVA IAALCGVEPP TSIIIKPPAQ 600 AKNKGTGKRI KRQRELAIER SGKASRKCGV CGEYAHHNAR SCPLK

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence

MTYARTCGFS VRQGTLKRGR DGKVTTRYLL CNREGVKGGG RSTPKPVEGG SGGPSTQRRR  60
RVSNRVNCNA RICITKDKGA GFIVSIFVPE HTHRMCSEPS KLFMRINRKL DVAQQAFLTN  120
CIKVNVGGSK GFRLYKESVG SFANVGATET EFHNFKRDLQ SYVADKDGEM IIAMFNQKHD  180
VLHVGDMYSL VFIPFTGVDH HKRCITFAGG LVTREDTDSY VWVLERFKTA MGKSPLCVVT  240
DEDPAMKSAI ARVLPECRHR YCMWHIMTKV SEKSGAELSK DQNFRNQLNN IVWNETISID  300
DFETQWQSLM EKYNLTGHRW FTKLYTDRRF WIPSYFLDLP MSGVLRTTSR SEAENSAYGK  360
NTRPHCSLVE FYVQFESVLE TQRHRQSKLN AESEGSLPDF KTPLALERHM AQVFTLTVFY  420
ELQVEIEAAC FYCSVVGIHA YGECIRYDIR GEYNVVHTVE YTPSLTIATC SCKLFERLGF  480
VCRHMFLVFK DAEMVSLPSR YIAARWCKQE GLASWCARCS DCPPLETVPS QLWTEIHNCA  540
VIVGSNKVRQ TRMLQVIKEL RDEFLGDGMD VDPSKVNGVA IAALCGVEPP TSIIIKPPAQ  600
AKNKGTGKRI KRQRELAIER SGKASRKCGV CGEYAHHNAR SCPLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-62	FAR1 family protein