PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195846.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 298aa MW: 33452.8 Da PI: 8.0396

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195846.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58	3.1e-18	55	154	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fY++YA+++GF+vr++++k+ +g+it++ Cs++g++ ++ + + +r+r+++r+gC+ak+ k+ k + +ev+ +e+ XP_019195846.1 55 EFYKAYATTTGFDVRRASEKRD-WQGQITWKYVLCSRSGFKLPTGQGdgvgvlsaedNAPPKRRRVTNRVGCNAKIIFKRVKdGNGYEVSAIEER 148 6**************99887.7888************99999**998888999*************997889***** PP FAR1 85 HnHela 90 H+H l+ XP_019195846.1 149 HTHLLC 154 *998 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MATGYNNSED GLTGKPTGCL MNISPGSTKY WTPQCEAAKT PFEGQVFTTL EGGIEFYKAY 60 ATTTGFDVRR ASEKRDWQGQ ITWKYVLCSR SGFKLPTGQG DGVGVLSAED NAPPKRRRVT 120 NRVGCNAKII FKRVKDGNGY EVSAIEERHT HLLCTAVSRP FMKANRKLDL GHQNFIINCA 180 KANIGYTKSF TLYEEMVGGF ENVGATVTDF GNYRRDIMAY IEGADAQLVI DKYMAKKDVS 240 TDFYFAHDVD ELDQLCRIFW ADPQARHSFK LFGDVMSFDA TYSTNRYIPH PTPTFMLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	119	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-22	FAR1 family protein