PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195829.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 652aa MW: 73453.1 Da PI: 8.1837

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.7	2.9e-21	66	153	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn YA++vGFsvrk +++++ +++i +++f C k g++++ ++ + ++ rtgC a ++ dg w vtk +eHnHel++ XP_019195829.1 66 LYNGYAYRVGFSVRKGQQRYKASTKSIQMKRFFCAKAGYKQKPNSG--VKLYSKIDMRTGCGAFVQFDVGGDGMWTVTKHLKEHNHELCS 153 7**************************************99887..888999********************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence
MEETMVRGED STDMISAIPV NEDCVGDSIS NDQAELNIDI DGSSSSPVDE DLVGVVVRNV 60 DEAFELYNGY AYRVGFSVRK GQQRYKASTK SIQMKRFFCA KAGYKQKPNS GVKLYSKIDM 120 RTGCGAFVQF DVGGDGMWTV TKHLKEHNHE LCSFGKSHLL RSHRRVGNNQ LEYLKDMKSS 180 GVALADGMRF LKHQSGGSPL VGFTNRDAYN SMASVSLKCL DGSDSNSLVE IFRRRQSNEA 240 DFFFDFETIM TDQCSAMAAG ISMVFPTSRH RLCIWHIGEN SKKHIKALRN HKDFLDMFNC 300 VLKYTETEAE FEVYWTRMVT KYNCHKNTWL EKLYDCREKW CPAFNKDYFS GGILSSQRSE 360 STNHAISRRL SKTAGLCDFY SSFVSVISEW RSKENGEDFR CSQGVPTMML DHVKLLSHAR 420 EYHVWRPDID IIRHEVTFKA INLDICCSCK LFSELGILCC HCLRILHVHC VSSIPDKYIL 480 KRWTKKAVER TNVDIASVFY NGGVPSSIWA VEISRKFQRL IVSSQDNSVA RQLCDEAVEN 540 ARKNIEAEIG DVNTEEGAVS SSSGIVQDPS SRRGKGVRNK RSSSVIEKKY NAARGRKSAA 600 NKLASITKGS VQSLVLENIS EIARDGYLVH PSTGGSQFVH FNKNVDHDVA ID

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence

MEETMVRGED STDMISAIPV NEDCVGDSIS NDQAELNIDI DGSSSSPVDE DLVGVVVRNV  60
DEAFELYNGY AYRVGFSVRK GQQRYKASTK SIQMKRFFCA KAGYKQKPNS GVKLYSKIDM  120
RTGCGAFVQF DVGGDGMWTV TKHLKEHNHE LCSFGKSHLL RSHRRVGNNQ LEYLKDMKSS  180
GVALADGMRF LKHQSGGSPL VGFTNRDAYN SMASVSLKCL DGSDSNSLVE IFRRRQSNEA  240
DFFFDFETIM TDQCSAMAAG ISMVFPTSRH RLCIWHIGEN SKKHIKALRN HKDFLDMFNC  300
VLKYTETEAE FEVYWTRMVT KYNCHKNTWL EKLYDCREKW CPAFNKDYFS GGILSSQRSE  360
STNHAISRRL SKTAGLCDFY SSFVSVISEW RSKENGEDFR CSQGVPTMML DHVKLLSHAR  420
EYHVWRPDID IIRHEVTFKA INLDICCSCK LFSELGILCC HCLRILHVHC VSSIPDKYIL  480
KRWTKKAVER TNVDIASVFY NGGVPSSIWA VEISRKFQRL IVSSQDNSVA RQLCDEAVEN  540
ARKNIEAEIG DVNTEEGAVS SSSGIVQDPS SRRGKGVRNK RSSSVIEKKY NAARGRKSAA  600
NKLASITKGS VQSLVLENIS EIARDGYLVH PSTGGSQFVH FNKNVDHDVA ID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	3e-33	FAR1 family protein