PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195790.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 607aa MW: 67951.5 Da PI: 6.3721

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195790.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.1	3.8e-14	417	459	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ErrRR+++N++f +L +l+P++ +K++K++iL +++eY+++L+ XP_019195790.1 417 SERRRREKLNERFTTLASLIPTS-----GKVDKISILDETIEYLRDLE 459 6*******************9.....9**************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
MAKGCEDQEG FAENFREKLG FAVRNIEWCY AIFWSISSSQ PGVLEWGDGY YNGDIKTRKT 60 VQATEISPDL LGLQRTEHLR ELYDSLLAAE ANTLAKIHPT ALSPEDLTDT EWYFLVCMSF 120 VFNVGQGLPG KALSKNQSIW LCNAHQADSR IFTRSLLAKS ASVQTVVCFP YLGGIIELGA 180 TDLVLEDLNL IHHIRTSYLD IPHAVGSKVP NYVSSNGKND KDIGGREPDE DKLDLCPVPP 240 VECEDNNNIG SPYNNSNGFG ANQEEGDSFM VEEMIGEASQ LQSWKLADDD ISNCIHNSTN 300 SSDCISQNYV NPERVSTLSD AEKLNGDSGK GVDVHYQSIL SNVLKSSHQL VLGPHFRNND 360 RESSFVTWKK ETSSKNPMPR TRTRPQRLLK KVLCGSHKQN DHHKPEADET DKSRVLSERR 420 RREKLNERFT TLASLIPTSG KVDKISILDE TIEYLRDLER RVRNVEPQKE RLELEARSDN 480 AERISDNCCA KSADKGKNVM RQKRKVSDME ENSRGKHKDC TKNGSGHDVT VSMISKDVTI 540 EMKCQWSEGM LMKIVQVLNN LHLDCHGIQS SNSDGILSVT IKAKMEGTKA ISMSLIRLAL 600 QKLIQAS

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

MAKGCEDQEG FAENFREKLG FAVRNIEWCY AIFWSISSSQ PGVLEWGDGY YNGDIKTRKT  60
VQATEISPDL LGLQRTEHLR ELYDSLLAAE ANTLAKIHPT ALSPEDLTDT EWYFLVCMSF  120
VFNVGQGLPG KALSKNQSIW LCNAHQADSR IFTRSLLAKS ASVQTVVCFP YLGGIIELGA  180
TDLVLEDLNL IHHIRTSYLD IPHAVGSKVP NYVSSNGKND KDIGGREPDE DKLDLCPVPP  240
VECEDNNNIG SPYNNSNGFG ANQEEGDSFM VEEMIGEASQ LQSWKLADDD ISNCIHNSTN  300
SSDCISQNYV NPERVSTLSD AEKLNGDSGK GVDVHYQSIL SNVLKSSHQL VLGPHFRNND  360
RESSFVTWKK ETSSKNPMPR TRTRPQRLLK KVLCGSHKQN DHHKPEADET DKSRVLSERR  420
RREKLNERFT TLASLIPTSG KVDKISILDE TIEYLRDLER RVRNVEPQKE RLELEARSDN  480
AERISDNCCA KSADKGKNVM RQKRKVSDME ENSRGKHKDC TKNGSGHDVT VSMISKDVTI  540
EMKCQWSEGM LMKIVQVLNN LHLDCHGIQS SNSDGILSVT IKAKMEGTKA ISMSLIRLAL  600
QKLIQAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	418	423	ERRRRE
2	419	424	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-174	bHLH family protein