PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195689.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 468aa MW: 53997.4 Da PI: 7.5919

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195689.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25	6.1e-08	6	47	49	89
FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 ++r+r+++r+gC+a++ k+ k ++ +ev+ +e+ HnH l XP_019195689.1 6 APTKRRRVTNRVGCNARIIFKRAKdNNGYEVYAIEERHNHLL 47 467899***************9999***********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MVEDNAPTKR RRVTNRVGCN ARIIFKRAKD NNGYEVYAIE ERHNHLLRTA ISRPFMKANR 60 KLDLGHQNFI INCAKANIGY NKSFTLYEEM VGGFANVGAT VTYFGNFKRD IMAYIEGADA 120 QLVLDKYMAK KEVSTDFYFA HDVDELDQLC RIFWADPQAR HNFKLFGDVM SFDATYSTNR 180 YKMVFVPFTG VDHHKKSVTF AAGLITREDV DSYAWLLEHF KNAMGKVPAC TVTDQDPAMR 240 VAIARVFDTT RHRFCMWHIM TKVCEKVGPT LASNEDFLKS LNDVVWSETQ SIREFETGWQ 300 TVMEKHNLVE HKWFTHLFEI RDHWIPAFFN DVFMGGLIRT TSRSESENNV FSNCTSPHFS 360 LTQFFIQFEK AIDKQRHNQS QLNANCEDKF PVLKTPILLE RQAAATYTIA VFYDVQKEIV 420 KACFSSQVVN KTVEGSTTTL LIEDTNTVFH SVEYNHIEGK AKCSCNMF

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MVEDNAPTKR RRVTNRVGCN ARIIFKRAKD NNGYEVYAIE ERHNHLLRTA ISRPFMKANR  60
KLDLGHQNFI INCAKANIGY NKSFTLYEEM VGGFANVGAT VTYFGNFKRD IMAYIEGADA  120
QLVLDKYMAK KEVSTDFYFA HDVDELDQLC RIFWADPQAR HNFKLFGDVM SFDATYSTNR  180
YKMVFVPFTG VDHHKKSVTF AAGLITREDV DSYAWLLEHF KNAMGKVPAC TVTDQDPAMR  240
VAIARVFDTT RHRFCMWHIM TKVCEKVGPT LASNEDFLKS LNDVVWSETQ SIREFETGWQ  300
TVMEKHNLVE HKWFTHLFEI RDHWIPAFFN DVFMGGLIRT TSRSESENNV FSNCTSPHFS  360
LTQFFIQFEK AIDKQRHNQS QLNANCEDKF PVLKTPILLE RQAAATYTIA VFYDVQKEIV  420
KACFSSQVVN KTVEGSTTTL LIEDTNTVFH SVEYNHIEGK AKCSCNMF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	13	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-73	FAR1 family protein