PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019195684.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 738aa    MW: 84309 Da    PI: 8.605
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019195684.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.31.7e-1543135990
            FAR1   9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     + GF++r s+  +  r+g+ ++++ vC++eg++++  ++             ++ +r+r+++rtgC+a+++ k    + ++vt++ ++HnH+++
  XP_019195684.1  43 HFGFDTRSSSVVTA-RDGTKIQKQIVCNREGFKNTGAQHchsqssadagegPSRPKRRRVSNRTGCRARIMFKYIGAAGYQVTTFIEKHNHSMS 135
                     68*****9998887.88889***************999999*******999899999**********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    
MEEFDRVPID IQSTNNPSLS PSSSSNGHTL TISLGMTQYW TPHFGFDTRS SSVVTARDGT  60
KIQKQIVCNR EGFKNTGAQH CHSQSSADAG EGPSRPKRRR VSNRTGCRAR IMFKYIGAAG  120
YQVTTFIEKH NHSMSSVLAR QFLKGNRNIS SVHQKFILDC AKANIGASKS HGLYSQIVGD  180
YSEVGATVVD FKNVRRDLRA YILGAVAQIL VHNLIKKQEM CPAFAFDYEV DEDEQMSRLF  240
WADPMSKKNF AAFGDVVSFD ATYSTNRYDR AMGMEPRIIV TDQDPAMKVA IPTVFKQARH  300
RYCMWHIMCK VGEKVGPTLN KDEEFRNKLN SIVWTSSLEP PDFEKQWREL MEKYNLVEYN  360
WFTTMFEARK HWILAYFRDS FMGGFLRTTS RSESENYTYN RFTGPQSSLV EFMMNFDNAL  420
KSQRNTNAKL NSDNEGYNPD MKTPLGIEKH ASIVYTITVF YQVQEEICAS CFKCMVLSVR  480
EDGGMLHYDI MDGKNKRFTV VHNVNDHEAK CSCKMFEMVG LLCRHIFVVF RDLERIPLKY  540
VVNRWTKDAS LKATFEIDGV IYDQNGPKDE KKMLLNKVWS DIHCCMDLAG SNMEQLTAFS  600
QVINEQKQLL LSGKEKLSPQ HSRRTVIESY CGSTEISEIN ILPPKQARNK GSGKRIKSSK  660
ELAMEKQEGM KCNFCGVRGD HHDTRTCPLN PKNKDKQKDI SSGSGSIRHI TSHPQMLNSQ  720
LLDVVWKLDD ELEAENHK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-77FAR1 family protein