PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019195566.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 298aa    MW: 33134.7 Da    PI: 5.1417
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019195566.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.44.2e-37101012102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isws+ g++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+kell++
  XP_019195566.1  10 FLMKTYQLVDDPATNDVISWSDGGSTFVVWKTAEFAKDLLPSYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFKRGEKELLSS 95 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k+
  XP_019195566.1  96 IQRRKT 101
                     ****96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MSQRTVPAPF LMKTYQLVDD PATNDVISWS DGGSTFVVWK TAEFAKDLLP SYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFKRGEK ELLSSIQRRK TVTSGGASKK PEVADNSALP  120
ESSGEEPGSS STSSPDSKNP GSVDTPGKSQ FPDLTDENEK LKRDNQMLSS ELAQTKKQCE  180
ELVTFLTQYV KVVPEQINRI MSQGISGSSH DDSINKVDNS ADLNSSQNKD DDDDDDENGE  240
TLKLFGVLLK EKKRKRDHDD NTDFSAASTK EMKPSIDCKN APWMKISPVP GKSGKVCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.16e-79HSF family protein