PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195558.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 497aa MW: 55424 Da PI: 5.6551

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	117.5	7.9e-37	19	110	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+++ed++++ ++sws+++nsfvv++ efak++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll++ XP_019195558.1 19 FLSKTYDMVEDPSTDAVVSWSKSNNSFVVWNVPEFAKDILPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGHRHLLKS 104 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i r+k+ XP_019195558.1 105 ITRRKH 110 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MDGGQESAAA AAGNSPPPFL SKTYDMVEDP STDAVVSWSK SNNSFVVWNV PEFAKDILPK 60 YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGHRH LLKSITRRKH VQSHQPPPPQ 120 VQNSSVGSCV EVGKFGLEEE VDRLKRDKNI LMQELVKLRQ QQQATDHQLQ NVGQKVHMME 180 QRQQQMMSFL AKAMQSPSFV AQMVHQQSDK VRISGVNKKR RLPNQEEENF NVKPVATLPD 240 GQIVRFQPLM NEAAKALLRQ ILKINASARL EPKFNNTSGF LTDNMHSTPN VLDSGDTANH 300 IYGVSLSEVL PTPSMPHLAS ETGLAFNHHP TSVSQIQPSS GVVPNDAKVT KFPETNAVSS 360 KVDKALSNFF QAQGHMTDDN ANHSDHMRSE SQDVGYIDTT SGFVDDMVPD GFSSDPDIDV 420 LMDEMPKLPG INDVFWDQIL SASPLTGDTD DINSVVLENG VEEHDLQSED VEWDKLKHMS 480 HLTEQMGLLV SGSPNAV

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MDGGQESAAA AAGNSPPPFL SKTYDMVEDP STDAVVSWSK SNNSFVVWNV PEFAKDILPK  60
YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGHRH LLKSITRRKH VQSHQPPPPQ  120
VQNSSVGSCV EVGKFGLEEE VDRLKRDKNI LMQELVKLRQ QQQATDHQLQ NVGQKVHMME  180
QRQQQMMSFL AKAMQSPSFV AQMVHQQSDK VRISGVNKKR RLPNQEEENF NVKPVATLPD  240
GQIVRFQPLM NEAAKALLRQ ILKINASARL EPKFNNTSGF LTDNMHSTPN VLDSGDTANH  300
IYGVSLSEVL PTPSMPHLAS ETGLAFNHHP TSVSQIQPSS GVVPNDAKVT KFPETNAVSS  360
KVDKALSNFF QAQGHMTDDN ANHSDHMRSE SQDVGYIDTT SGFVDDMVPD GFSSDPDIDV  420
LMDEMPKLPG INDVFWDQIL SASPLTGDTD DINSVVLENG VEEHDLQSED VEWDKLKHMS  480
HLTEQMGLLV SGSPNAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-141	HSF family protein