PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019195398.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 307aa    MW: 35350.7 Da    PI: 10.398
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019195398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.6e-14331151299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ++ rl++p kf ++hg +   +k   le ++g++ ++++ +  ++gr++l+kGW+eF k   ++eg f+vFk+dg+s f  +v +f+k
  XP_019195398.1  33 ELTRLRFPLKFDRRHGRN--LPKVACLEVPTGQVSKIQV-VHDSQGRIWLAKGWEEFTKNYSIREGHFLVFKYDGESHF--HVLIFDK 115
                     56789**********977..8899********9999999.4566678****************************9999..*****98 PP
2B349.66.9e-16215300496
                     E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   4 vltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     v+ p +v +s +r+ +p  fa++h   + +s++l l +  grsW  k+  + ++ +  +  GWk Fv +n+Lk+gD+++++ ++ ++  l v +
  XP_019195398.1 215 VMYPTYVYSSeNRMNIPLAFAKKHF--PGQSTDLLLVS-GGRSWPAKY--TVSRTHARIY-GWKPFVVDNKLKVGDVCILEIMKGKK--LSVNI 300
                     566777776669************5..34666677665.9********..5555555555.********************776444..45544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
METKPFRRNG ERPSRPNSSE NRPQFYKIIL AHELTRLRFP LKFDRRHGRN LPKVACLEVP  60
TGQVSKIQVV HDSQGRIWLA KGWEEFTKNY SIREGHFLVF KYDGESHFHV LIFDKTASEI  120
EYPEIIVSHG GVENLEDLSQ KFGPNKRKRQ EDQTGSFCNR FNHVRVKVEN SAPLIMTPKI  180
SSGEKQRLVK TKTEMGSAYE RAKAFKSKNP FHISVMYPTY VYSSENRMNI PLAFAKKHFP  240
GQSTDLLLVS GGRSWPAKYT VSRTHARIYG WKPFVVDNKL KVGDVCILEI MKGKKLSVNI  300
IVLPADD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-27B3 family protein