PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195068.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 332aa MW: 35397.8 Da PI: 5.0553

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42	1.6e-13	91	139	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++N+ ++ Lr+l+P + k+ + a+i e +v+YI++Lq XP_019195068.1 91 CHITVERNRRKQMNDHLSVLRSLMPAF---YVKRGDQASIIEGVVDYINELQ 139 6999********************9...9******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MDNGEILSDF FEDSELAGDD IFSILDALDG ASKTTDLLSP KSVSSGAVQE SCETAAVAAA 60 SPRTCKKRKT TSAAASDGSE DGQQQQPRTS CHITVERNRR KQMNDHLSVL RSLMPAFYVK 120 RGDQASIIEG VVDYINELQQ ILQSLETKKQ RKAYSSEVLS PRILSPSPRK PPLSPRLSLP 180 PISPRTPQPT SPYKPTNPST STRLQPPPSL AAAGYLLPAA ATTISEPAAA SSSSTSAIDS 240 ANELAANSTS AIADVEVKFS GSNVILKTVS PRIPGQAVKI ISALEDLALE ILHVSISTIN 300 DDTSLNSYTI KIGIECQLSA EELAQQIQQT FC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53210.1	1e-42	bHLH family protein