PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195042.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 479aa MW: 54664.3 Da PI: 6.1218

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.7	1.5e-07	100	136	54	90
FAR1 54 traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++ tr gC a+++ +dg w vtk ++ HnHel+ XP_019195042.1 100 SKIDTRSGCGACVQFDVGEDGLWTVTKHVKVHNHELC 136 67899*******************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MDDAVDQRDE ALDQRDEAGD ELHTVSEDVV VDSPSSDPIE LDIDGSSSNP VDEDLVGVVV 60 SNGVEAYELY NNYAYRVGFS VRKGNQRCKV KANAGVRAYS KIDTRSGCGA CVQFDVGEDG 120 LWTVTKHVKV HNHELCAVDK SHLLRSHRNV GDNQLLYLKD LKKSGVAMAD GIRFLKHQAG 180 GSPLVGFTNR DAYNSIASDT SKRLDGTGSN SLIEIFRKRQ STESDFFFDF EVDCDSRLCS 240 FFLEDGRMRQ DYELFGDLLV HDTTYRTNKY DMICGPFVGM NHHCMNVMFG CGFLMNERIE 300 SFVWLFRAFL RSMNEKCPQT IMTDQCASMA AAICQVFPTS RHRLCIWHIG ENSKKHIKAL 360 RNNKDFLDMF NCVLKYTETE AEFEFYWTRL VTDYKCHKNS WIQKLYDCRE KWCPAFNKDY 420 FSGGILSSQR SETTNHSISR RLSKTAGLCD FYSSFVSVTS EWRSKENGED FRCTQGYPT

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MDDAVDQRDE ALDQRDEAGD ELHTVSEDVV VDSPSSDPIE LDIDGSSSNP VDEDLVGVVV  60
SNGVEAYELY NNYAYRVGFS VRKGNQRCKV KANAGVRAYS KIDTRSGCGA CVQFDVGEDG  120
LWTVTKHVKV HNHELCAVDK SHLLRSHRNV GDNQLLYLKD LKKSGVAMAD GIRFLKHQAG  180
GSPLVGFTNR DAYNSIASDT SKRLDGTGSN SLIEIFRKRQ STESDFFFDF EVDCDSRLCS  240
FFLEDGRMRQ DYELFGDLLV HDTTYRTNKY DMICGPFVGM NHHCMNVMFG CGFLMNERIE  300
SFVWLFRAFL RSMNEKCPQT IMTDQCASMA AAICQVFPTS RHRLCIWHIG ENSKKHIKAL  360
RNNKDFLDMF NCVLKYTETE AEFEFYWTRL VTDYKCHKNS WIQKLYDCRE KWCPAFNKDY  420
FSGGILSSQR SETTNHSISR RLSKTAGLCD FYSSFVSVTS EWRSKENGED FRCTQGYPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-66	FAR1 family protein