PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195027.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 352aa MW: 39830.9 Da PI: 9.0398

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195027.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	240.5	7.1e-74	71	340	2	273
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + lL++cA+a+++ d ++ ++lLa++++++sp+g+ ++la+y+++AL+arl++ ++ ++ l+ s++ + ++ l+a++++ ++s + k+s++ XP_019195027.1 71 RGLLTQCAQAMENYDGRAMTELLAKIRHHSSPRGNGKEKLAFYLANALEARLNGAGTAIFT-LQFSNN--ISAANILKAYHMYIKASQFKKISNI 162 679*************************************************7777763.333333..359999*************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 N+ I++ ++g++++H+iDf++ +G QWp+++q L++Rp+gpp+lRiTg++ p++g +e++e+t rL+k++e+++vpfef++ +akr+e++ XP_019195027.1 163 YVNHYIMKMAAGKHALHVIDFGVLYGYQWPCMIQGLSNRPGGPPKLRITGINLPQPGfkPAERVEATVARLKKYCEQFNVPFEFKA-IAKRWETI 256 ****************************************************999***********************.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +le+L+++++E+laVn++++l++++de+v ++s+rd vL l+k+++P+++++ + +ns+ F +rf ea+ ++s+lfd++ea XP_019195027.1 257 KLEDLEIERDEVLAVNCMYHLENVPDETVVSDSPRDIVLGLIKQIRPDIFIHGVGNGAYNSPFFTTRFREAIFHFSTLFDMFEA 340 *******************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MEDESAEKQG NKQLATYNDE TEPPLEKLNE VLLCNSQEPR KKPEESKGAA APPPPRPRKK 60 REPQKEVVDL RGLLTQCAQA MENYDGRAMT ELLAKIRHHS SPRGNGKEKL AFYLANALEA 120 RLNGAGTAIF TLQFSNNISA ANILKAYHMY IKASQFKKIS NIYVNHYIMK MAAGKHALHV 180 IDFGVLYGYQ WPCMIQGLSN RPGGPPKLRI TGINLPQPGF KPAERVEATV ARLKKYCEQF 240 NVPFEFKAIA KRWETIKLED LEIERDEVLA VNCMYHLENV PDETVVSDSP RDIVLGLIKQ 300 IRPDIFIHGV GNGAYNSPFF TTRFREAIFH FSTLFDMFEA VRVLLRVNLS GL

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MEDESAEKQG NKQLATYNDE TEPPLEKLNE VLLCNSQEPR KKPEESKGAA APPPPRPRKK  60
REPQKEVVDL RGLLTQCAQA MENYDGRAMT ELLAKIRHHS SPRGNGKEKL AFYLANALEA  120
RLNGAGTAIF TLQFSNNISA ANILKAYHMY IKASQFKKIS NIYVNHYIMK MAAGKHALHV  180
IDFGVLYGYQ WPCMIQGLSN RPGGPPKLRI TGINLPQPGF KPAERVEATV ARLKKYCEQF  240
NVPFEFKAIA KRWETIKLED LEIERDEVLA VNCMYHLENV PDETVVSDSP RDIVLGLIKQ  300
IRPDIFIHGV GNGAYNSPFF TTRFREAIFH FSTLFDMFEA VRVLLRVNLS GL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	61	RKKPEESKGAAAPPPPRPRKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	1e-107	GRAS family protein