PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019194988.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 269aa    MW: 30076.9 Da    PI: 6.996
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019194988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv ++++ G g+W++ ++  g+ R++k+c++rw +yl
   XP_019194988.1 14 KGAWTAEEDKILVAYITKNGHGNWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding49.51e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE + ++++++ lG++ W+ Ia++++ gRt++++k++w+++l
   XP_019194988.1  67 RGQFSSEEVDAIIQLHTVLGNK-WSVIASHLP-GRTDNDIKNFWNSHL 112
                      899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MGRTPCCNKE GLRKGAWTAE EDKILVAYIT KNGHGNWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPGIKRGQF SSEEVDAIIQ LHTVLGNKWS VIASHLPGRT DNDIKNFWNS HLRKQRSDPN  120
HQNHPIPHPH GNIDEKVQWE SVSVAPSLLD LPPASKMDRD PFLRLWNSEV GEAFCGFKKP  180
FGVPCQSPVS SSSKFESSSG ITLHSQPAAS KLLSSADTVE EEEEEDTKSY ELIDPSETTL  240
KILLDFPPVV NDMGFFQGPG DNLSIYLQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-69MYB family protein