PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019194954.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 341aa    MW: 38088 Da    PI: 8.2197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019194954.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-10161206555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er+RR+ + + f+ L +++P +     kK++K ++L  +++Y+++Lq
  XP_019194954.1 161 HIMAERKRRQLLSQQFQDLSTIVPGL-----KKMDKTSVLGDTIKYLRNLQ 206
                     899***********************.....9******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MIKSYSKKNK VNGWILQDFD DLIFNGEDEI MNTIEELAAA LGEDLPNASS TSSESVDSAL  60
TGKRSPSPNV VETQERVPKQ RKLHHGVVHG KPDHTTADLS PSSSTPFILS FGYPNNCFPQ  120
KGEDIILETL KPEIPATVDA ARKKINSSGR ASKLPSNTYD HIMAERKRRQ LLSQQFQDLS  180
TIVPGLKKMD KTSVLGDTIK YLRNLQERVK NLEEQASKQT IKSNVYVRRS QLLIEDEGSS  240
YEDSGSGEQS LPEIETRVSD RNILLRIYCE KHRGVLTNIF TEVDKFNLSV TNTSVSHFGS  300
LALDITIIAE MEKEKDLSVK DLVKGIRTSL QHATRASKKS K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERKRRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-48bHLH family protein