PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194779.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 598aa MW: 67644.8 Da PI: 4.9075

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.3	9.2e-51	13	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+ ++Lk+++ ++++ + +vi e+d+yk++P dLp +k+k+++++w+fFs+ d+ky++g+r+nratk+gyWk+tgkd++v+ XP_019194779.1 13 LPPGFRFHPTDEELLLYFLKRRICRRRILT-DVIGETDVYKWDPDDLPelSKLKTGDRQWFFFSPMDRKYPNGRRTNRATKHGYWKTTGKDRTVT 106 79***********************988.99**********95449999************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kktLvfykgrap+ge+tdWvmhey+l XP_019194779.1 107 C-NSRDVGVKKTLVFYKGRAPTGERTDWVMHEYTL 140 .999***************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MVMAKEGFPD QRLPPGFRFH PTDEELLLYF LKRRICRRRI LTDVIGETDV YKWDPDDLPE 60 LSKLKTGDRQ WFFFSPMDRK YPNGRRTNRA TKHGYWKTTG KDRTVTCNSR DVGVKKTLVF 120 YKGRAPTGER TDWVMHEYTL GEMELSRCQS AQDYYALYKV FKKSGPGPKN GEQYGAPFNE 180 EDWADDECFG TNLPVEQEKS RKNVNDVGLI NDPKPNDVLR DLPPLIDGLE EFLKYIADEP 240 SLTELLPVDN SYVDKLVGNE DTANALLDHS AGEVYLPVQT ATLFSVPPLH NEQANFDPIH 300 SWTLQPQLHE ATEVTSAPVV EEDFLEDFLE MNDLDGSELS VNQNLDKPVE NCGSQQVVDF 360 DGLNEFELYQ DAAMFLHDMG AIGVSQGAEQ ATNHVANGII NPTEASQMIN QQLYLNEGNE 420 FNHQLWSHDL RWCSTVNPTE ASQSANLPLT SGMVYGNHFE DHPVGANLNQ NNIQDDATNS 480 SFSSALWVFM ESIPATPASD AESALVNKAF ERMSSFKRLR LNARNVKVAS GNTSATSTRS 540 GKSKNGLYRL FCFSLIGVLC AILWMFVHRS LIVVGRKSCH YFGIFMKSRE SNIIVYYK

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MVMAKEGFPD QRLPPGFRFH PTDEELLLYF LKRRICRRRI LTDVIGETDV YKWDPDDLPE  60
LSKLKTGDRQ WFFFSPMDRK YPNGRRTNRA TKHGYWKTTG KDRTVTCNSR DVGVKKTLVF  120
YKGRAPTGER TDWVMHEYTL GEMELSRCQS AQDYYALYKV FKKSGPGPKN GEQYGAPFNE  180
EDWADDECFG TNLPVEQEKS RKNVNDVGLI NDPKPNDVLR DLPPLIDGLE EFLKYIADEP  240
SLTELLPVDN SYVDKLVGNE DTANALLDHS AGEVYLPVQT ATLFSVPPLH NEQANFDPIH  300
SWTLQPQLHE ATEVTSAPVV EEDFLEDFLE MNDLDGSELS VNQNLDKPVE NCGSQQVVDF  360
DGLNEFELYQ DAAMFLHDMG AIGVSQGAEQ ATNHVANGII NPTEASQMIN QQLYLNEGNE  420
FNHQLWSHDL RWCSTVNPTE ASQSANLPLT SGMVYGNHFE DHPVGANLNQ NNIQDDATNS  480
SFSSALWVFM ESIPATPASD AESALVNKAF ERMSSFKRLR LNARNVKVAS GNTSATSTRS  540
GKSKNGLYRL FCFSLIGVLC AILWMFVHRS LIVVGRKSCH YFGIFMKSRE SNIIVYYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-120	NAC family protein