PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194597.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 830aa MW: 95113.8 Da PI: 7.5308

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.4	3.6e-26	72	158	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA++vGF +++++s++sk++g++++ + vCs+ g++++++k+ ++r+ +t+Cka +++k+++dgkw+++++++eHnHe++p XP_019194597.1 72 SFYREYARSVGFGITIKASRRSKKSGKFIDVKIVCSRFGTKRDSDKA----VNSRSCPKTDCKAGMHIKRKQDGKWHIYSFVKEHNHEICP 158 5***************************************99988....9999*******************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence
MEIDLELPSR VDEKLDSVTA TTDANAVLEE GENVDGVGDF MDGDSISLAG KGMISYEPRK 60 DLEFETKEAA YSFYREYARS VGFGITIKAS RRSKKSGKFI DVKIVCSRFG TKRDSDKAVN 120 SRSCPKTDCK AGMHIKRKQD GKWHIYSFVK EHNHEICPDD FYYAIRGRIK QSINAQHQKK 180 ALQLALDGED IQAMLDSFML MQGETPGFYY AVDFDKERRM RNVCWVDAKG RHDYGYFSDV 240 IFFDTTYIRK KYKVPLLPIV GVNHNFQLLL LGCGLIGDET SSNYIWLMRT WLRAVGGQSP 300 KVVITNDNNS LQEAIDDVFP NARHCFCLWH VMEKISHHLS HKMHNFEVFL RKFNKCVYQP 360 WSEECFEKRW SDKIVDAFEL RGEECMGFLF ESRKKWVPAY MRGTFLGGLC TVERSEGISS 420 FFDNYIHKET TFKEFIDHYK TFLHDCYEEE TKADFETKYK QPTIKSVFPY EKQMSTVYTH 480 AVFKKFQSEV HGMGSCDVQK EGEDGKTMLY RVDDSEKQQK FIVAWIERQS NVYCSCHSFE 540 YRGFLCRHAM KVLQIYGMSS IPPQYVLKRW TREAKIRETT SRLPSSPHYR VQRLNDLCKL 600 AVKLGEAGSL SLESYNIVLY ALEEAMEHCV GENNSARSSL ENNILSTQNL PCIDIEKQGS 660 GTAKRLKKKQ LPKKHKVQSV TEEISSGVQD SNQQESSNPR EQTLESSYVA FLDMQGMELG 720 SRTPVTDGYY STQQSIQGLG QLASLPMLRE GYYYNQGMQG ILQGNLNSIA TRLSHYPIQS 780 FQGMGQLGFR AAASMHGGFE IQDGLLDMGN SINSAGKQDK HFSSRDCRAQ

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence

MEIDLELPSR VDEKLDSVTA TTDANAVLEE GENVDGVGDF MDGDSISLAG KGMISYEPRK  60
DLEFETKEAA YSFYREYARS VGFGITIKAS RRSKKSGKFI DVKIVCSRFG TKRDSDKAVN  120
SRSCPKTDCK AGMHIKRKQD GKWHIYSFVK EHNHEICPDD FYYAIRGRIK QSINAQHQKK  180
ALQLALDGED IQAMLDSFML MQGETPGFYY AVDFDKERRM RNVCWVDAKG RHDYGYFSDV  240
IFFDTTYIRK KYKVPLLPIV GVNHNFQLLL LGCGLIGDET SSNYIWLMRT WLRAVGGQSP  300
KVVITNDNNS LQEAIDDVFP NARHCFCLWH VMEKISHHLS HKMHNFEVFL RKFNKCVYQP  360
WSEECFEKRW SDKIVDAFEL RGEECMGFLF ESRKKWVPAY MRGTFLGGLC TVERSEGISS  420
FFDNYIHKET TFKEFIDHYK TFLHDCYEEE TKADFETKYK QPTIKSVFPY EKQMSTVYTH  480
AVFKKFQSEV HGMGSCDVQK EGEDGKTMLY RVDDSEKQQK FIVAWIERQS NVYCSCHSFE  540
YRGFLCRHAM KVLQIYGMSS IPPQYVLKRW TREAKIRETT SRLPSSPHYR VQRLNDLCKL  600
AVKLGEAGSL SLESYNIVLY ALEEAMEHCV GENNSARSSL ENNILSTQNL PCIDIEKQGS  660
GTAKRLKKKQ LPKKHKVQSV TEEISSGVQD SNQQESSNPR EQTLESSYVA FLDMQGMELG  720
SRTPVTDGYY STQQSIQGLG QLASLPMLRE GYYYNQGMQG ILQGNLNSIA TRLSHYPIQS  780
FQGMGQLGFR AAASMHGGFE IQDGLLDMGN SINSAGKQDK HFSSRDCRAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.2	0.0	FAR1 family protein