PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194560.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

DBB

Protein Properties

Length: 295aa MW: 32147 Da PI: 5.0045

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194560.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.1	1.2e-05	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC +C ++ H H++vpl XP_019194560.1 4 QCNVCEVAEANVLCCADEAALCWSCDQKVHAAnklaskHQRVPL 47 7***999*******************66899999999986 PP
2	zf-B_box	28.9	2.4e-09	54	94	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +kC+ ++e +fC +++ llC++C +++H H XP_019194560.1 54 IPKCDICQEAVGYFFCLEDRALLCRKCDVAIHTAnayvsaH 94 689*****9*******************555566666 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MKIQCNVCEV AEANVLCCAD EAALCWSCDQ KVHAANKLAS KHQRVPLSGS SSSIPKCDIC 60 QEAVGYFFCL EDRALLCRKC DVAIHTANAY VSAHQRFLLT GVKVGLEPTE PGPSSSLGKS 120 QSGEKISELE FLSVSRRNPH MASDIQYNKA LPTQITEVGN CAPTKAPYAG GSAAGSIPQW 180 QLDEFLGLNE FSQNYGYMDN NSSKADSGKL GDTDCSATLR VNEEELDGDE CLGPGLDASW 240 AVPQIPSPPT ASGLYWPKTN QNSFDSAVFV PDICYSPMQN FDNQQPNRMK RRRQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	1e-103	DBB family protein