PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019193987.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ARF | ||||||||
Protein Properties | Length: 1050aa MW: 116786 Da PI: 6.5772 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.6 | 5e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv++++L++gD v+F + +++ XP_019193987.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QEIVSRDLHDQTWTFRHIYRGQPKRHLLTTGWSVFVSSKRLCAGDAVLFIR--DEK 217 99*****************************9555444.38************************************************4..466 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l++++ r+ XP_019193987.1 218 SQLLLGIKRA 227 6678888765 PP | |||||||
2 | Auxin_resp | 122.6 | 2.9e-40 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+ eFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW+nS+Wr+L+ XP_019193987.1 252 AAHAAANNSPFTIFYNPRASPCEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 334 79*******************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1050 aa Download sequence |
MKVPSNGYIA NTGEGERKVI NSELWHACAG PLVSLPAVGS LVVYFPQGHS EQVAASMQKE 60 TDGIPNYPNL PSKLICMLHN VTLHADPESD EVYAQMTLQP VNKYDQEALL ISDMGLKQSR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQEIVSRD LHDQTWTFRH 180 IYRGQPKRHL LTTGWSVFVS SKRLCAGDAV LFIRDEKSQL LLGIKRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPCEFVIPLA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPTRVS IWDIEPVVTP 360 FYICPPPFFR PKFPRQPGFM GDESDMENVF RRGMPWIGDE FGGLKDASSS MFPGLSLVQW 420 MSMQQQTNQQ VPAQSGLNQN QNQNALQGNL GVDNHSRLLN FQSPGFAAQN LQFNKPNQLN 480 QQVSQLQQTP SPTWPPQQQQ QPQMQLQQHP LQQLQQNMHS SSLSNGVVPS QIPNQSHPQT 540 AMHSQLQQQQ QQLMTGNLQV PQNPPAAASK PPFPQTSLPQ ELPFQQQIDQ QQSVLLHKPQ 600 QQQQQTQLQQ APLQLLQQSL MQRPQSHQSS HPSLSEHQLQ LQMLQKLQQQ QQQQQQHLLS 660 PVGSNLEPMP QQVLQQNRQS QPPPLPQQPL GSNSFSTSPL LQSPKYPVNQ PQGQQKPPIT 720 TIKAHSGLTD GDTRLRSTSP STNNCPVFPS NFLNRNQQPP TILLDDSIVD PSSNMVQELC 780 TKSDIPIKHE LPISKGTEQP KYKGNGTDNL DATSSATSYC LDASGLQQNF SLPGFCLDGD 840 VQSHSRNSMP SAANIDALAP DALLSRGYDS GKDMQNLFSN YGNSPRDIET ELSTAGINSQ 900 TFGVPDMSFK AGCSNDVTIN EPGVLNGGLW PNQTPRMRTY TKVQKRGSVG RTIDVTRYKG 960 YDELRQDLAR MFGIEGQLED PQRTEWKLVY VDHENDILLV GDDPWDEFVS CVQSVKILSA 1020 AEVQQMSLDG DLGPGPNQAC SGTDSGGAWR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | ARF family protein |