PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193806.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 685aa MW: 74028.6 Da PI: 6.6622

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.6	4.3e-15	266	325	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_019193806.1 266 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 325 57*****************666664478446***********************98 PP
2	AP2	46.5	9.3e-15	368	419	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ +++g XP_019193806.1 368 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIRFRG 419 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence
MAASMNNWLG FSLSPHQDPQ PQEISSISAS DDVSAAAAAG DCFDLSCRRM LPSTSPFGIL 60 EGFSSRNHQS QDWSHMKDAE TMIFSQHGLE SQQEVAPKLE NFLGIGRDRQ LQACTTTAAA 120 AAANANNNPT FGLSMIKNWL RTNKTTSDSG GCVVAAGMMS SSQAQCLSLS MGAASQPSSA 180 AAAAALPLLN ISGGENDHLH HVIAATTSSA AGCLSESENN SQQTENGTSS QSPATAIADA 240 QTSTATANGL DATSRKSIDT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQTRKGRQ 300 VYLGGYDKEE KAARAYDLAA LKYWGPTTTT NFPISNYEKE LEEMKHMTRQ EYVASLRRKS 360 SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIRFRGL 420 NAVTNFEISR YDVKSIMDSA TLPIGAAAKR LKDAEQQSER SQRTVEDTHN IGLLSHFTDG 480 ITYGAAAAAA HHHGWPSLAF QQAQPLNMHY PYAHPQRLPL WCKQEQHQPH DNADVTHGGI 540 QDIHQLQLGY NSAAAAAAAA AHNNSLQPSV IHNLMGLDSS SMELSYGVTG EGGGNNNVNG 600 GFVMMPIGHD GTLPTNGFGE NEVKPLGYSD NMFGSSSSSP DPYNQERSFY LYNSQQPPNP 660 AATCNNWVPT AVPTIPATFP AWNDT

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence

MAASMNNWLG FSLSPHQDPQ PQEISSISAS DDVSAAAAAG DCFDLSCRRM LPSTSPFGIL  60
EGFSSRNHQS QDWSHMKDAE TMIFSQHGLE SQQEVAPKLE NFLGIGRDRQ LQACTTTAAA  120
AAANANNNPT FGLSMIKNWL RTNKTTSDSG GCVVAAGMMS SSQAQCLSLS MGAASQPSSA  180
AAAAALPLLN ISGGENDHLH HVIAATTSSA AGCLSESENN SQQTENGTSS QSPATAIADA  240
QTSTATANGL DATSRKSIDT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQTRKGRQ  300
VYLGGYDKEE KAARAYDLAA LKYWGPTTTT NFPISNYEKE LEEMKHMTRQ EYVASLRRKS  360
SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIRFRGL  420
NAVTNFEISR YDVKSIMDSA TLPIGAAAKR LKDAEQQSER SQRTVEDTHN IGLLSHFTDG  480
ITYGAAAAAA HHHGWPSLAF QQAQPLNMHY PYAHPQRLPL WCKQEQHQPH DNADVTHGGI  540
QDIHQLQLGY NSAAAAAAAA AHNNSLQPSV IHNLMGLDSS SMELSYGVTG EGGGNNNVNG  600
GFVMMPIGHD GTLPTNGFGE NEVKPLGYSD NMFGSSSSSP DPYNQERSFY LYNSQQPPNP  660
AATCNNWVPT AVPTIPATFP AWNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-130	AP2 family protein