PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193785.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 387aa MW: 42457.1 Da PI: 10.1131

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.9	6.4e-14	74	161	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea e+ +l+rg+lk+++W++v++ + +++ +++ + +qCk++++ ++k+yk +k+ + + s++ +f++le XP_019193785.1 74 CWSEGATAVLIEAWGERYLELSRGNLKQQHWKDVADIVsSREDYSKppkTDIQCKNRIDTVKKKYKLEKAKIAAG--QGPSRWTFFEKLE 161 7***********************************866677662226679****************98..45567****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MMEDDEEVQS QASEGTGSPG SPRSNGRITV TVAAAPPPQN TNTLTLALPI QQQSKTSGGG 60 GGGGGGGGGG REDCWSEGAT AVLIEAWGER YLELSRGNLK QQHWKDVADI VSSREDYSKP 120 PKTDIQCKNR IDTVKKKYKL EKAKIAAGQG PSRWTFFEKL EHLIGPTAKG NNTSGSGGFA 180 GPSASNQKVP MGIPMGARSA PQLRQHQPPL QMQQKHKQAF RRRPPIDSDT SESEPEPSPD 240 STDSSPPPTY EKKRPRIQQR ELMNSSVVRH AMPRGRDGGA ANASGSERDR NWANSVRELT 300 QAILKFGEAY EQAENAKLQQ MVEMEKQRMK FAKELELQRM QFFMKTQLEL SQLKNRRVGS 360 SNHHSNNTTT TATNNNNNNN NNSFSSN

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MMEDDEEVQS QASEGTGSPG SPRSNGRITV TVAAAPPPQN TNTLTLALPI QQQSKTSGGG  60
GGGGGGGGGG REDCWSEGAT AVLIEAWGER YLELSRGNLK QQHWKDVADI VSSREDYSKP  120
PKTDIQCKNR IDTVKKKYKL EKAKIAAGQG PSRWTFFEKL EHLIGPTAKG NNTSGSGGFA  180
GPSASNQKVP MGIPMGARSA PQLRQHQPPL QMQQKHKQAF RRRPPIDSDT SESEPEPSPD  240
STDSSPPPTY EKKRPRIQQR ELMNSSVVRH AMPRGRDGGA ANASGSERDR NWANSVRELT  300
QAILKFGEAY EQAENAKLQQ MVEMEKQRMK FAKELELQRM QFFMKTQLEL SQLKNRRVGS  360
SNHHSNNTTT TATNNNNNNN NNSFSSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-56	Trihelix family protein