PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193579.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 483aa MW: 52458.9 Da PI: 9.1109

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	63	83	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H XP_019193579.1 63 CEICGKGFQRDQNLQLHRRGH 83 *******************88 PP
2	zf-C2H2	13.4	0.00022	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_019193579.1 137 WKCEKCSKRYAVQSDWKAHSKTC 159 58*****************9998 PP
3	zf-C2H2	11.9	0.00071	167	185	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsrk+++ +H + XP_019193579.1 167 DCGTVFSRKDSFITHRAFC 185 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MTEKEALLSS NALTQTPTPA GSISNPPCPP PKKKRNLPGT PDPEAEVIAL SPKTLMATNR 60 FLCEICGKGF QRDQNLQLHR RGHNLPWKLK QRSSKEVRKR VYVCPEKSCV HHHPSRALGD 120 LTGIKKHYCR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT VFSRKDSFIT 180 HRAFCDALAE ETARVTAASN MQNAAAVAAL GSNINYHFIG APPPIGPGAG MAAPHFGSIF 240 KSTIGAGNDE NMNPVRQGQL PVWMAPGQTI TSQLQGHQEF QSFGSENHPM VTTTTSCSNP 300 LSSSSSFQLN WNNLVGNKIS TTSNSNSTNN NNGEDKMDGN QAQVVSVQSL FSTQHHPHHH 360 QMPSANMSAT ALLQKAAQVG ATTSDPGFLG SLGLKCNNNN NGNENKFSGL LYAETSISMV 420 SSHLGSEMES PVDGLSTLSH VDQMYPSKRR HITQNEGGGG QTRDFLGVGV QSICHPSSIN 480 GWI

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MTEKEALLSS NALTQTPTPA GSISNPPCPP PKKKRNLPGT PDPEAEVIAL SPKTLMATNR  60
FLCEICGKGF QRDQNLQLHR RGHNLPWKLK QRSSKEVRKR VYVCPEKSCV HHHPSRALGD  120
LTGIKKHYCR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT VFSRKDSFIT  180
HRAFCDALAE ETARVTAASN MQNAAAVAAL GSNINYHFIG APPPIGPGAG MAAPHFGSIF  240
KSTIGAGNDE NMNPVRQGQL PVWMAPGQTI TSQLQGHQEF QSFGSENHPM VTTTTSCSNP  300
LSSSSSFQLN WNNLVGNKIS TTSNSNSTNN NNGEDKMDGN QAQVVSVQSL FSTQHHPHHH  360
QMPSANMSAT ALLQKAAQVG ATTSDPGFLG SLGLKCNNNN NGNENKFSGL LYAETSISMV  420
SSHLGSEMES PVDGLSTLSH VDQMYPSKRR HITQNEGGGG QTRDFLGVGV QSICHPSSIN  480
GWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-119	C2H2 family protein