PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193502.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 516aa MW: 58283.2 Da PI: 6.4269

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193502.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	414	461	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E l+d+v q G g+W+ I r + +Rt+ ++k++w+++l XP_019193502.1 414 WTVSEVRELIDGVSQCGVGRWSQIKRLFFsssDHRTPVDLKDKWRNLL 461 **********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MHSQEESEEL RNCSEMKGGP DPSISFEREN KMNLEVLDIE PSHTEAEIFE ASNDPFSACE 60 DYLLGVIQET ECWSDLLEMT NHELSNNKFD DKMLVDDNCL SFPTSFTSGD IDYLENVSSF 120 LPGSISSDNN DEDAIFTPDL TSSGSICMST IKQNKELSIG GPNVDHESLY LQDSSTKNSS 180 QDSSCNGVHT QKRVRKPTRR YIDESADLVN TRRVKKKLEV STSLSKDKCL QVKCSKKHNK 240 PQALEFQAEE TLCEAIQVPF GPLVPEECHI MHPSSVVKVK PNEIPLCGNK DGDTKHASDV 300 KKVKLNQLSS FSPENCRQRY ELDVHKVKLN KTVKPKHMSG YEECDDKHTT NVNKANQNHI 360 LPFGSKEYLN SPACNVNKVL KSDDEEMLMD ESDDGVVTLR SDGDGARRKH HRLWTVSEVR 420 ELIDGVSQCG VGRWSQIKRL FFSSSDHRTP VDLKDKWRNL LKATHLQNQS SKNTGGKGKQ 480 SFSWRPLPKP ILHRVVELAS VHPYPRNCRS KTPHSY

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MHSQEESEEL RNCSEMKGGP DPSISFEREN KMNLEVLDIE PSHTEAEIFE ASNDPFSACE  60
DYLLGVIQET ECWSDLLEMT NHELSNNKFD DKMLVDDNCL SFPTSFTSGD IDYLENVSSF  120
LPGSISSDNN DEDAIFTPDL TSSGSICMST IKQNKELSIG GPNVDHESLY LQDSSTKNSS  180
QDSSCNGVHT QKRVRKPTRR YIDESADLVN TRRVKKKLEV STSLSKDKCL QVKCSKKHNK  240
PQALEFQAEE TLCEAIQVPF GPLVPEECHI MHPSSVVKVK PNEIPLCGNK DGDTKHASDV  300
KKVKLNQLSS FSPENCRQRY ELDVHKVKLN KTVKPKHMSG YEECDDKHTT NVNKANQNHI  360
LPFGSKEYLN SPACNVNKVL KSDDEEMLMD ESDDGVVTLR SDGDGARRKH HRLWTVSEVR  420
ELIDGVSQCG VGRWSQIKRL FFSSSDHRTP VDLKDKWRNL LKATHLQNQS SKNTGGKGKQ  480
SFSWRPLPKP ILHRVVELAS VHPYPRNCRS KTPHSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	5e-24	MYB_related family protein