PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193141.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 430aa MW: 46050.7 Da PI: 6.0015

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193141.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.4	5.4e-07	45	74	3	32
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClle 32 +C++++++++ C d++ ++C+ C XP_019193141.1 45 SLICDNCNSEPAMVRCMDDDICICQACDWG 74 579************************855 PP
2	CCT	65.7	1.3e-22	374	417	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RY eK+ktR FeK+irY+sRKa+A++R RvKGrFvk+ XP_019193141.1 374 RDIAMMRYHEKKKTRTFEKQIRYASRKARADTRRRVKGRFVKAG 417 7779*************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MEPLCEFCGV VRAVVYCKAD SAKLCLHCDG CVHSANGLSR RHQRSLICDN CNSEPAMVRC 60 MDDDICICQA CDWGGNGCSG QLGHRRKMLS AYTGCPSPAD FARMWASVLE APNNGNSNSV 120 PCSADLNKGN DDHQGFSAGL VASRLNELAS CLKFDPSLMI PPFGRDHAAE SSLLKNKGCA 180 NAKDLELPEG DGMDAAGDLS LNLNGGYEMF NGLQQGQPRY NGEDEGMGCL TTMEKNFSGT 240 ESSSHVVSAL IFTFIHSALT SSPGRQECIG LEWLDIGSSG IDLVPSNMNN VAMNCTLMNP 300 PPSTCNKNNG GGLGLPTGQQ AAPHSAAAIS NITNGDSSVA DYQDCGLSPA ALLNGGGGET 360 KCESNLEVSC PQARDIAMMR YHEKKKTRTF EKQIRYASRK ARADTRRRVK GRFVKAGEEY 420 DYDPQITKQA

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MEPLCEFCGV VRAVVYCKAD SAKLCLHCDG CVHSANGLSR RHQRSLICDN CNSEPAMVRC  60
MDDDICICQA CDWGGNGCSG QLGHRRKMLS AYTGCPSPAD FARMWASVLE APNNGNSNSV  120
PCSADLNKGN DDHQGFSAGL VASRLNELAS CLKFDPSLMI PPFGRDHAAE SSLLKNKGCA  180
NAKDLELPEG DGMDAAGDLS LNLNGGYEMF NGLQQGQPRY NGEDEGMGCL TTMEKNFSGT  240
ESSSHVVSAL IFTFIHSALT SSPGRQECIG LEWLDIGSSG IDLVPSNMNN VAMNCTLMNP  300
PPSTCNKNNG GGLGLPTGQQ AAPHSAAAIS NITNGDSSVA DYQDCGLSPA ALLNGGGGET  360
KCESNLEVSC PQARDIAMMR YHEKKKTRTF EKQIRYASRK ARADTRRRVK GRFVKAGEEY  420
DYDPQITKQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	2e-41	CO-like family protein