PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193041.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 470aa MW: 51325.6 Da PI: 6.0257

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193041.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.6	1.1e-16	206	265	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++t+e+Aaka++ a++k++g XP_019193041.1 206 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDTEEKAAKAYDLAALKYWG 265 78*****************655454478446***********************98 PP
2	AP2	48.5	2.2e-15	308	359	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_019193041.1 308 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 359 78**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MNSWLGFSVV QDDDGNQDFP GNEEKEEEET TATNNVGQQG DVEGEGGCLA NLMSFPSHGF 60 FDQGASLYEK NMVETPKLED FLGSCYTPPP EIPTGEHLSS FPPTAAPPLP FHYPHPSNNP 120 AAMYPFLFDN APSPSPSPAA TSSTSISGLK SWLRQTPPPP PPPFQPLSLA VTPSTYSHPE 180 PAVSDAKKTP PAAPRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCR KEGQTRKGRQ 240 VYLGGYDTEE KAAKAYDLAA LKYWGPTTHI NFPISMYEKE LEEMKNMSRQ EYVAHLRRKS 300 SGFSRGASVY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGT 360 SAVTNFDITR YDVKRICSST TLIGGDLAKR SSGHGNPANP LDEFSSGASP SAASSQPILA 420 GESSASGGDM DCSRGYYALQ GPSQYEDGNN EGDNNPSIVH PAPMFALLNE

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MNSWLGFSVV QDDDGNQDFP GNEEKEEEET TATNNVGQQG DVEGEGGCLA NLMSFPSHGF  60
FDQGASLYEK NMVETPKLED FLGSCYTPPP EIPTGEHLSS FPPTAAPPLP FHYPHPSNNP  120
AAMYPFLFDN APSPSPSPAA TSSTSISGLK SWLRQTPPPP PPPFQPLSLA VTPSTYSHPE  180
PAVSDAKKTP PAAPRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCR KEGQTRKGRQ  240
VYLGGYDTEE KAAKAYDLAA LKYWGPTTHI NFPISMYEKE LEEMKNMSRQ EYVAHLRRKS  300
SGFSRGASVY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGT  360
SAVTNFDITR YDVKRICSST TLIGGDLAKR SSGHGNPANP LDEFSSGASP SAASSQPILA  420
GESSASGGDM DCSRGYYALQ GPSQYEDGNN EGDNNPSIVH PAPMFALLNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-112	AP2 family protein