PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192907.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GeBP

Protein Properties

Length: 499aa MW: 55729.5 Da PI: 5.2755

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192907.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	106.8	1.6e-33	143	233	3	98
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++rlws+eD++v+LqG++d+ka++g ++ d++af++f+k++++++vsk q++eKirrLKkKf + ++k g+e +f k+hd+ +felsk+iWg XP_019192907.1 143 SNRLWSDEDQLVVLQGMVDYKAQNG--SYTDMSAFHDFIKDKLHIEVSKVQMTEKIRRLKKKFLTLSEK---GDELDFPKPHDSMSFELSKQIWG 232 68*********************..99************************************...********************9 PP DUF573 98 s 98 + XP_019192907.1 233 T 233 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MAPKSKIRLV DQPPSASSSH EDEGQSEQEE LSEQEADKSE AEYESEPDER APSSPILNQD 60 DSVSECDESH ATLPSPSASD FTIKPILSSK LPPPSPPKPP APSKSSAKRA AEAIEKDSKR 120 KRSKTGEGDG NAEEKKSAAS AGSNRLWSDE DQLVVLQGMV DYKAQNGSYT DMSAFHDFIK 180 DKLHIEVSKV QMTEKIRRLK KKFLTLSEKG DELDFPKPHD SMSFELSKQI WGTASGSVNG 240 KNLNAISNNV ELNVKIANGK VKKPAEVKKS SEKPVEAKKI SEKPVEVKKI SESRNSVKVD 300 NYMNIPNEEE SEKKRKKSAT KAEEIEKKKK KKQKIALVEK DKQIAFEEKE ERVEQSALEE 360 KDDPTVVEET DKQIALDQSD KQIAIDERDK QIALEDKNKQ VIKDIVNGEV ETEEGDFNLK 420 YPHLANSFSV KNYPTGSPET LNMLKEKLNL IGSSKAEEIE EKWTKLLEEQ AEVCGKMAGL 480 LQQQMGLVLE ARRQKRGNL

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MAPKSKIRLV DQPPSASSSH EDEGQSEQEE LSEQEADKSE AEYESEPDER APSSPILNQD  60
DSVSECDESH ATLPSPSASD FTIKPILSSK LPPPSPPKPP APSKSSAKRA AEAIEKDSKR  120
KRSKTGEGDG NAEEKKSAAS AGSNRLWSDE DQLVVLQGMV DYKAQNGSYT DMSAFHDFIK  180
DKLHIEVSKV QMTEKIRRLK KKFLTLSEKG DELDFPKPHD SMSFELSKQI WGTASGSVNG  240
KNLNAISNNV ELNVKIANGK VKKPAEVKKS SEKPVEAKKI SEKPVEVKKI SESRNSVKVD  300
NYMNIPNEEE SEKKRKKSAT KAEEIEKKKK KKQKIALVEK DKQIAFEEKE ERVEQSALEE  360
KDDPTVVEET DKQIALDQSD KQIAIDERDK QIALEDKNKQ VIKDIVNGEV ETEEGDFNLK  420
YPHLANSFSV KNYPTGSPET LNMLKEKLNL IGSSKAEEIE EKWTKLLEEQ AEVCGKMAGL  480
LQQQMGLVLE ARRQKRGNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	313	317	KKRKK
2	313	332	KKRKKSATKAEEIEKKKKKK
3	313	334	KKRKKSATKAEEIEKKKKKKQK
4	313	342	KKRKKSATKAEEIEKKKKKKQKIALVEKDK
5	314	333	KKRKKSATKAEEIEKKKKKK
6	314	335	KKRKKSATKAEEIEKKKKKKQK
7	314	343	KKRKKSATKAEEIEKKKKKKQKIALVEKDK
8	314	332	KRKKSATKAEEIEKKKKKK
9	315	334	KKRKKSATKAEEIEKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	2e-23	GeBP family protein