PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192906.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GeBP

Protein Properties

Length: 519aa MW: 58012.1 Da PI: 5.2202

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192906.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	106.7	1.7e-33	143	233	3	98
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++rlws+eD++v+LqG++d+ka++g ++ d++af++f+k++++++vsk q++eKirrLKkKf + ++k g+e +f k+hd+ +felsk+iWg XP_019192906.1 143 SNRLWSDEDQLVVLQGMVDYKAQNG--SYTDMSAFHDFIKDKLHIEVSKVQMTEKIRRLKKKFLTLSEK---GDELDFPKPHDSMSFELSKQIWG 232 68*********************..99************************************...********************9 PP DUF573 98 s 98 + XP_019192906.1 233 T 233 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MAPKSKIRLV DQPPSASSSH EDEGQSEQEE LSEQEADKSE AEYESEPDER APSSPILNQD 60 DSVSECDESH ATLPSPSASD FTIKPILSSK LPPPSPPKPP APSKSSAKRA AEAIEKDSKR 120 KRSKTGEGDG NAEEKKSAAS AGSNRLWSDE DQLVVLQGMV DYKAQNGSYT DMSAFHDFIK 180 DKLHIEVSKV QMTEKIRRLK KKFLTLSEKG DELDFPKPHD SMSFELSKQI WGTASGSVNG 240 KNLNAISNNV ELNVKIANGK VKKPAEVKKS SEKPVEAKKI SEKPVEVNKI SEKPVEVNKF 300 SEQPVEVKKI SESRNSVKVD NYMNIPNEEE SEKKRKKSAT KAEEIEKKKK KKQKIALVEK 360 DKQIAFEEKE ERVEQSALEE KDDPTVVEET DKQIALDQSD KQIAIDERDK QIALEDKNKQ 420 VIKDIVNGEV ETEEGDFNLK YPHLANSFSV KNYPTGSPET LNMLKEKLNL IGSSKAEEIE 480 EKWTKLLEEQ AEVCGKMAGL LQQQMGLVLE ARRQKRGNL

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MAPKSKIRLV DQPPSASSSH EDEGQSEQEE LSEQEADKSE AEYESEPDER APSSPILNQD  60
DSVSECDESH ATLPSPSASD FTIKPILSSK LPPPSPPKPP APSKSSAKRA AEAIEKDSKR  120
KRSKTGEGDG NAEEKKSAAS AGSNRLWSDE DQLVVLQGMV DYKAQNGSYT DMSAFHDFIK  180
DKLHIEVSKV QMTEKIRRLK KKFLTLSEKG DELDFPKPHD SMSFELSKQI WGTASGSVNG  240
KNLNAISNNV ELNVKIANGK VKKPAEVKKS SEKPVEAKKI SEKPVEVNKI SEKPVEVNKF  300
SEQPVEVKKI SESRNSVKVD NYMNIPNEEE SEKKRKKSAT KAEEIEKKKK KKQKIALVEK  360
DKQIAFEEKE ERVEQSALEE KDDPTVVEET DKQIALDQSD KQIAIDERDK QIALEDKNKQ  420
VIKDIVNGEV ETEEGDFNLK YPHLANSFSV KNYPTGSPET LNMLKEKLNL IGSSKAEEIE  480
EKWTKLLEEQ AEVCGKMAGL LQQQMGLVLE ARRQKRGNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	337	KKRKK
2	333	352	KKRKKSATKAEEIEKKKKKK
3	333	354	KKRKKSATKAEEIEKKKKKKQK
4	333	362	KKRKKSATKAEEIEKKKKKKQKIALVEKDK
5	334	353	KKRKKSATKAEEIEKKKKKK
6	334	355	KKRKKSATKAEEIEKKKKKKQK
7	334	363	KKRKKSATKAEEIEKKKKKKQKIALVEKDK
8	334	352	KRKKSATKAEEIEKKKKKK
9	335	354	KKRKKSATKAEEIEKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	2e-23	GeBP family protein