PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192874.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 693aa MW: 79901.1 Da PI: 6.5448

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.3	1.3e-23	72	161	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke ++w+v+++++ HnHel XP_019192874.1 72 YSSFARKNGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKELvdgVAQWYVSQFSNVHNHELL 161 9*****************8888.**************************************998766789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence
MAGKTLNNIW IQRQQCPCGD WKCYVKCDGD DQVTSGAQMA KSGLASFVSQ ENICTPYVGQ 60 IFKSDDEAYE SYSSFARKNG FSIRKARSTE SQNLGVYRRD FVCYRSGFNQ PRKKANVEHP 120 RDRKSVRCGC DAKLYLTKEL VDGVAQWYVS QFSNVHNHEL LEDDQVRLLP AYRKIQEPDQ 180 ERILLLSKAG FPVNRIVKVL ELEKGVRPGQ LPFIEKDVRN FVRTCKKTVQ ENDALITEKR 240 ENDLFDLLES CKAAKERDEQ FAYKYTTDGN GKVENIAWVY GDAVRAAAIF GDVVTFDTTY 300 RSITYNMLLG VWFAIDNHGK AIFLGCVLLQ DETSQSFSWA LQSFIHCMEG RQPETIVTDL 360 DSELRDAIAN EMPNTKHVIC LWKILPKLSS WFSTPLGVQY AEFKSEFDII SQLENVDEFE 420 HQWNHLVARY GLGSDKHIAL LFAYRMSWPI SYIRNFFLAH SMTPEYSKLV ETFLKHILSE 480 QPNLQLFFEQ VSVSISFMNH SKEKLLHMPI KTCMPLEEHA RSILTPYAFS AMQHEIVLSM 540 QYSVTELPNG SYLVRHYKKM EAECFVIWIP ENEQVHCSCK EFEHSGILCR HCLRLLLIKN 600 YFQIPGKYFP RRWLMESSLI PFGDSIIQTN TDEYSQAFHA LTASIFSESL ISKERASYVD 660 RELRQLLEHV QSMPVVEEVT LSSVPNNVSE TQG

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence

MAGKTLNNIW IQRQQCPCGD WKCYVKCDGD DQVTSGAQMA KSGLASFVSQ ENICTPYVGQ  60
IFKSDDEAYE SYSSFARKNG FSIRKARSTE SQNLGVYRRD FVCYRSGFNQ PRKKANVEHP  120
RDRKSVRCGC DAKLYLTKEL VDGVAQWYVS QFSNVHNHEL LEDDQVRLLP AYRKIQEPDQ  180
ERILLLSKAG FPVNRIVKVL ELEKGVRPGQ LPFIEKDVRN FVRTCKKTVQ ENDALITEKR  240
ENDLFDLLES CKAAKERDEQ FAYKYTTDGN GKVENIAWVY GDAVRAAAIF GDVVTFDTTY  300
RSITYNMLLG VWFAIDNHGK AIFLGCVLLQ DETSQSFSWA LQSFIHCMEG RQPETIVTDL  360
DSELRDAIAN EMPNTKHVIC LWKILPKLSS WFSTPLGVQY AEFKSEFDII SQLENVDEFE  420
HQWNHLVARY GLGSDKHIAL LFAYRMSWPI SYIRNFFLAH SMTPEYSKLV ETFLKHILSE  480
QPNLQLFFEQ VSVSISFMNH SKEKLLHMPI KTCMPLEEHA RSILTPYAFS AMQHEIVLSM  540
QYSVTELPNG SYLVRHYKKM EAECFVIWIP ENEQVHCSCK EFEHSGILCR HCLRLLLIKN  600
YFQIPGKYFP RRWLMESSLI PFGDSIIQTN TDEYSQAFHA LTASIFSESL ISKERASYVD  660
RELRQLLEHV QSMPVVEEVT LSSVPNNVSE TQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein