PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192633.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 474aa MW: 52487.6 Da PI: 5.1292

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.4e-12	273	319	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er+RR ++N+++e L++l+P++ K++ a+++ A+ YI++L XP_019192633.1 273 TKHFATERQRRVHLNDKYEALKKLVPNP-----SKNDRASVVHDAIGYINEL 319 78***********************9.....7*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MYVESDGDCF DPSVGVGEGG GVVVLGAEDD GFPQNPSFPL EEEEEGHPYH HHHHNSSEAA 60 AMEMEMELQQ QLNLEMEQCY NDNNGNNGHH HHQGDPHFMQ KLGHENQGLS NWEELGFSHQ 120 PQSFQIPMPE TPCPPAPDLL NMFPLPRCSP SSLLPNPSFS STFLTSLGLF GDLPSSAADG 180 ASPSTVVCDP SLLPLNLPPQ PPLLRELFHS LPQGGYGFGA SRSSGSLFGE VDEREVNGAF 240 YQTVDGCRDF ENGVFELTGD MNVLAKNRDG KGTKHFATER QRRVHLNDKY EALKKLVPNP 300 SKNDRASVVH DAIGYINELK RTVGELKILV EKKRCSRERM KRHKTEGCSS MMDGGDLKSV 360 EDVDQSYSGT TLRSSWLQRK SKNTEVDVRI IDDEVTVKLV QQKRINCLLF VSKALDELQL 420 DLHHVAGGLI GDYYSFLFNS KICEGSTVYA SAIANKLIEV VDKHYTAIAP TTSY

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MYVESDGDCF DPSVGVGEGG GVVVLGAEDD GFPQNPSFPL EEEEEGHPYH HHHHNSSEAA  60
AMEMEMELQQ QLNLEMEQCY NDNNGNNGHH HHQGDPHFMQ KLGHENQGLS NWEELGFSHQ  120
PQSFQIPMPE TPCPPAPDLL NMFPLPRCSP SSLLPNPSFS STFLTSLGLF GDLPSSAADG  180
ASPSTVVCDP SLLPLNLPPQ PPLLRELFHS LPQGGYGFGA SRSSGSLFGE VDEREVNGAF  240
YQTVDGCRDF ENGVFELTGD MNVLAKNRDG KGTKHFATER QRRVHLNDKY EALKKLVPNP  300
SKNDRASVVH DAIGYINELK RTVGELKILV EKKRCSRERM KRHKTEGCSS MMDGGDLKSV  360
EDVDQSYSGT TLRSSWLQRK SKNTEVDVRI IDDEVTVKLV QQKRINCLLF VSKALDELQL  420
DLHHVAGGLI GDYYSFLFNS KICEGSTVYA SAIANKLIEV VDKHYTAIAP TTSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	9e-82	bHLH family protein