PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192304.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 375aa MW: 40674.4 Da PI: 7.1584

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192304.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.0005	229	267	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_019192304.1 229 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 267 6677889999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MNRGVLQSSS LPVQQMMGGG SPNWWSIINN TMRPPLPHHQ LHHHHHQPPP PPPFLAPLPT 60 LFPSPPPPTA TPSLPPLSAS SWTDNNHHEH QLPESWSQLL LGGLVGEEDK SGFSGMMQQG 120 VKNKLENWEQ QLLSHASASA AAMVYDVKQE NPTNTYVYGG GHGGNVEFPA KSCVTSLSSN 180 NMLDFSNKSD ARHPPPDHSS ECNSTATGGA PTKKARIQPS STQSTFKVRK EKLGDRITAL 240 HQLVSPFGKT DTASVLLEAI GYIRFLQSQI EALSLPYLGN GSGNNMRHQQ QSFVQGAERN 300 SLFPEDPGQL LNDNCLKRKG TSDHHQPQDG DEEAKKDLRS RGLCLVPISC TLQVGSDNGA 360 DYWAPAAFGG GGFRS

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MNRGVLQSSS LPVQQMMGGG SPNWWSIINN TMRPPLPHHQ LHHHHHQPPP PPPFLAPLPT  60
LFPSPPPPTA TPSLPPLSAS SWTDNNHHEH QLPESWSQLL LGGLVGEEDK SGFSGMMQQG  120
VKNKLENWEQ QLLSHASASA AAMVYDVKQE NPTNTYVYGG GHGGNVEFPA KSCVTSLSSN  180
NMLDFSNKSD ARHPPPDHSS ECNSTATGGA PTKKARIQPS STQSTFKVRK EKLGDRITAL  240
HQLVSPFGKT DTASVLLEAI GYIRFLQSQI EALSLPYLGN GSGNNMRHQQ QSFVQGAERN  300
SLFPEDPGQL LNDNCLKRKG TSDHHQPQDG DEEAKKDLRS RGLCLVPISC TLQVGSDNGA  360
DYWAPAAFGG GGFRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	4e-93	bHLH family protein