PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192218.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 619aa MW: 67579.1 Da PI: 7.0558

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192218.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3.1e-07	245	265	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + G C Gd C FaHg XP_019192218.1 245 PCPEFKK-GSCGKGDACEFAHG 265 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence
MKGEYCPLGS QMEKKDGFFC ESCSKLLEFS AADDVGGFIG EVEGKGCDVN ELSLWYGRRI 60 GSRKMGLEER SPLMIASMYG SVEVLKYIVQ TGKVDVNMAC GSDGATALHC AVAGGSEAAA 120 EVVKILVDAS ADVNCVDASG NKPYSLKSSG GLKRRTLELL KGKVGDDEEE KTEMVGRLVK 180 EYPIDTSLPD INNGIYGSDE FRMYSFKIKP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYT 240 YSCVPCPEFK KGSCGKGDAC EFAHGIFESW LHPAQYRTRL CKDETGCSRK VCFFAHKPEE 300 LRPLYASTGS AIPSPKSVSV SSMDMATLSP LALGSSSLLL STTSTPPMSP TVSCSSSPMW 360 QNKMNFTPPT LQLPGSRLKT ARNARDLELE MELLSLESIR SQQHRQQQLV DEMAGLSSPS 420 HWNKDYNRLG DFKPTNLEDV LALASLDSPL ASQLQCLSPK VQSPSSSQLQ SPIRQNMNQL 480 RASYPATLSS SPARKTSSYG YDSSAAVAAA VMNSRSAGFA KRSQSFIDRS GGATHHAANS 540 RGLSDWSSPD GKLDWGFNGD DLNKLKRSSS FGIRGANASN RTPIIAPSQT HEPDVSWVHD 600 PNPSWIDQML YIEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence

MKGEYCPLGS QMEKKDGFFC ESCSKLLEFS AADDVGGFIG EVEGKGCDVN ELSLWYGRRI  60
GSRKMGLEER SPLMIASMYG SVEVLKYIVQ TGKVDVNMAC GSDGATALHC AVAGGSEAAA  120
EVVKILVDAS ADVNCVDASG NKPYSLKSSG GLKRRTLELL KGKVGDDEEE KTEMVGRLVK  180
EYPIDTSLPD INNGIYGSDE FRMYSFKIKP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYT  240
YSCVPCPEFK KGSCGKGDAC EFAHGIFESW LHPAQYRTRL CKDETGCSRK VCFFAHKPEE  300
LRPLYASTGS AIPSPKSVSV SSMDMATLSP LALGSSSLLL STTSTPPMSP TVSCSSSPMW  360
QNKMNFTPPT LQLPGSRLKT ARNARDLELE MELLSLESIR SQQHRQQQLV DEMAGLSSPS  420
HWNKDYNRLG DFKPTNLEDV LALASLDSPL ASQLQCLSPK VQSPSSSQLQ SPIRQNMNQL  480
RASYPATLSS SPARKTSSYG YDSSAAVAAA VMNSRSAGFA KRSQSFIDRS GGATHHAANS  540
RGLSDWSSPD GKLDWGFNGD DLNKLKRSSS FGIRGANASN RTPIIAPSQT HEPDVSWVHD  600
PNPSWIDQML YIEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-159	C3H family protein