PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019192198.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 787aa    MW: 87335 Da    PI: 4.709
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019192198.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.48.9e-1164157842374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L+ cA+av+++d + a+++L+++++++s++gd mqRla+yf+ +L+ar+a+s++++ykal + +ts    +++l+a++l+  ++P+ k+s++
  XP_019192198.1 415 RTILTLCAQAVAADDRRTAHEFLKQIRQHSSQTGDGMQRLAHYFADGLEARMAGSGTQIYKALISMPTS---AADVLKAYQLYLAACPFRKISNF 506
                     67899**********************************************************999999...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                       N++I++ ++ ++ vHiiDf+i +G+QWp+++q L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfefn+ +a+++e++
  XP_019192198.1 507 FSNKTIMNVAKDAKSVHIIDFGILYGFQWPCFIQRLSSRPGGPPKLRITGIDFPQPGfrPAERIEETGQRLANYAERFNVPFEFNA-IAQNWETV 600
                     ********************************************************9*****************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++e+L ++ +E+++Vn+ ++  +llde+v ++s+rd vL+l+++l+P v++    +  +n++ F  rf eal +ysalfd+lea++pre +er+ 
  XP_019192198.1 601 KIEDLGINGDEVVVVNCLYRFRNLLDETVVVDSPRDIVLSLIRELNPAVFITGSVNGAYNAPFFISRFREALFHYSALFDMLEANIPREIHERVL 695
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+ ++gre++nv+acegaer+er e +++ + r ++aGF+++pl++++++  ++ ++ +++d + ++++ ++l++gWk+r ++++S W+
  XP_019192198.1 696 LEKTIFGREAMNVIACEGAERIERPEIYKQCQIRYTRAGFRQLPLNDEIMQMSRHRVKAYHKD-FIIDQDGKWLLQGWKGRIVYALSTWK 784
                     *************************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    
MVMDKNFGGF YQDTCGVELG DESLQVFLDQ EAISGLSVND AFMDVNVGKN SKDGGLLNFL  60
DPNLVSNGRD GETVVGQNQI TENVNAVTPP SFPYPDSNNG LGVDGGSLED RSELAFPPLQ  120
SDPGLNVVAP SSEGDGLEDY DFSDVVLTFI SQMLMEEEMG EKACMFQESA ALQAAERSLY  180
EVIGEEYPSA LDQNGNNGDS GLVQPNWDPD SIECENSTGQ IAPVGVTLRT NSQSSYSSSS  240
SSGTANDGHL DSPVSTLRIP DVHVDSPLTT LRIPEIFNST ESIMQFNKGV EEASKFLPNA  300
NGFLVDVGYI GLEKDNENQV SREGSRRKKN LHYEGEDLDE GRSYKQSAVS SESTVILEMF  360
DKVLLCSGGK NESALRQSWQ NVSSKKAMDN DLPKGSTGKK SRGRKGSKSE VVDLRTILTL  420
CAQAVAADDR RTAHEFLKQI RQHSSQTGDG MQRLAHYFAD GLEARMAGSG TQIYKALISM  480
PTSAADVLKA YQLYLAACPF RKISNFFSNK TIMNVAKDAK SVHIIDFGIL YGFQWPCFIQ  540
RLSSRPGGPP KLRITGIDFP QPGFRPAERI EETGQRLANY AERFNVPFEF NAIAQNWETV  600
KIEDLGINGD EVVVVNCLYR FRNLLDETVV VDSPRDIVLS LIRELNPAVF ITGSVNGAYN  660
APFFISRFRE ALFHYSALFD MLEANIPREI HERVLLEKTI FGREAMNVIA CEGAERIERP  720
EIYKQCQIRY TRAGFRQLPL NDEIMQMSRH RVKAYHKDFI IDQDGKWLLQ GWKGRIVYAL  780
STWKAAY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein