PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192006.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 269aa MW: 30691.6 Da PI: 4.9095

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192006.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3.1e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ + G +W+++++ g++R++k+c++rw +yl XP_019192006.1 14 KGPWTAEEDRKLISFILTNGHCCWRAVPKLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	56.5	6.3e-18	69	111	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T+eE++l +d++++lG++ W++Ia++++ gRt++++k++w+++ XP_019192006.1 69 LLTQEEEKLVIDLHARLGNR-WAKIAARLP-GRTDNEIKNHWNTH 111 569***************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MGRQPCCDKL GVKKGPWTAE EDRKLISFIL TNGHCCWRAV PKLAGLRRCG KSCRLRWTNY 60 LRPDLKRGLL TQEEEKLVID LHARLGNRWA KIAARLPGRT DNEIKNHWNT HIKKKLIKMG 120 VDPLTHEPLQ KDDDEEMLPP SSLSLHSGDD QKLKPAENDD DLEEELPKME EHQQCSSKEA 180 MFAAGPQVEE ADYDPWMSQL LSDTFFNDLS WSFGGDECSD FAMSSSSHGS SSEWLMDLQD 240 FGEDQSWALL PGNQPPKNMD MEIHTQDII

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22680.1	8e-87	MYB family protein