PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019191956.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 263aa    MW: 28461.1 Da    PI: 10.3713
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019191956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.67.7e-32123179158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq Rakle+++kl  k+r+pylheSRh hA++R RgsgGrF
  XP_019191956.1 123 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKTRRPYLHESRHLHAVNRVRGSGGRF 179
                     57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MEPLSLQLQG HASPPAQSAF QSPREVTVAR KTTSQDPCPS SGSEESRGKH VPAQIKPMFV  60
ISNPEFPVNP AQGEMGQSTI HSNYNYSDPY FSGLFTAYGP QPFPQMVGIA PARVPLPLDL  120
AEDGPIYVNA KQYHGILRRR QIRAKLEAQN KLVKTRRPYL HESRHLHAVN RVRGSGGRFL  180
STKKLRESLS MNCGSGSDSA KHHRASTASS TPHGMSQGVH GNVIFQPPDH HRLSSLPSHM  240
AAAAASMQGG GGLTCNAYSP GVR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.17e-45NF-YA family protein